GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:07:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig32588 mRNA sequence.
JW082832.1:709-730
TCCGGGTCAATGTAGGCCGATTCAGCATCC709TCCGGTTCACCTGCTTTTCCTTCTTCTCTTTCGTTGTTACTTCTTCCATTGT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:17571726-17571747
TCCGGGTCAATGTAGGCCGATTCAGCATCC17571726TCCGGTTCACCTGCTTTTCCTTCTTCTCTTTCGTTGTTACTTCTTCCATTGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:18039437-18039458
TCCGGGTCAATGTAGGCCGATTCAGCATCC18039437TCCGGTTCACCTGCTTTTCCTTCTTCTCTTTCGTTGTTACTTCTTCCATTGT
Sequence 1004 from patent US 9920330.
MI474065.1:663-684
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG663AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
Sequence 1004 from patent US 10253327.
MM824241.1:663-684
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG663AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
Sequence 1004 from patent US 10815492.
MV826823.1:663-684
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG663AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
Sequence 1004 from patent US 11326179.
OO166511.1:663-684
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG663AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
Sequence 1004 from patent US 11365421.
OO291917.1:663-684
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG663AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
CGN-60683 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w29m17 5', mRNA sequence.
DV711798.1:606-627
GTGGCTGTTGCTCCGGAGAAACTAAGGTTG606AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
CGN-61849 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w30k15 5', mRNA sequence.
DV712722.1:606-627
GTGGCTGTTGCTCCGGAGAAACTAAGGTTG606AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
TransId-226606 CACATN1 Coffea arabica cDNA clone CACATN1-8B48TV similar to N-acetyltransferase - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR994403.1:449-470
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG449AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
TransId-204729 CACATN1 Coffea arabica cDNA clone CACATN1-1A88TVE similar to N-acetyltransferase - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT003709.1:657-678
GTGGCTGTTGCTCCGGAGAAGCTAAGGTCG657AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA
CCES82 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110722.1:606-627
GTGGCTGTTGCTCCGGAGAAACTAAGGTTG606AAGGAAAAGCAGGTGAACCGGAAGCAAAGGCAGAGTGATGATCTCATCGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCGGTTCACCTGCTTTTCCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCGGTTCACCTGCTTTTCCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TCCGGTTCACCTGCTTTTCCTT&k=0&no_gap=0&offset=0&limit=50
0.726 | 0.616 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGAAAAGCAGGTGAACCGGA&k=0&no_gap=0&offset=0&limit=47
0.732 | 0.007 | cgi_end;

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