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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:34:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 19 from Patent WO9716559.
A62514.1:103-122
ACCTACACCGCCTCCTCCATCTCCACCCCC103TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Sequence 28 from Patent WO9716559.
A62523.1:249-268
ACCTACACCGCCTCCTCCATCTCCACTCCC249TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCTCATAGG
Sequence 30 from Patent WO9716559.
A62525.1:217-236
ACCTACACCGCCTCCTCCATCTCCACTCCC217TCCGTCTCCGTCGAACCAATCTCAAAATTCAAATCCACAGATTCACCCAT
Sequence 31 from Patent WO9716559.
A62526.1:248-267
ACCTACACCGCCTCCTCCATCTCCACCCCC248TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Sequence 34 from Patent WO9716559.
A62529.1:393-412
ACCTACACCGCCTCCTCCATCTCCACTCCC393TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Sequence 19 from Patent EP0771878.
A72387.1:103-122
ACCTACACCGCCTCCTCCATCTCCACCCCC103TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Sequence 28 from Patent EP0771878.
A72396.1:249-268
ACCTACACCGCCTCCTCCATCTCCACTCCC249TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCTCATAGG
Sequence 137002 from Patent WO2008034648.
FB917729.1:181-200
ACCTACACCGCCTCCTCCATCTCCACTCCC181TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Sequence 137002 from Patent EP2090662.
HB787788.1:181-200
ACCTACACCGCCTCCTCCATCTCCACTCCC181TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
SS2922.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS2922.txt 5', mRNA sequence.
CV546710.1:259-278
ACCTACACCGCCTCCTCCATCTCCACCCCC259TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica oleracea var. viridis mRNA, clone: KALE-108M18, 5' end sequence.
DK497161.1:219-238
ACCTACACCGCCTCCTCCATCTCCACTCCC219TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica oleracea var. viridis mRNA, clone: KALE-129I04, 5' end sequence.
DK505078.1:264-283
ACCTACACCGCCTCCTCCATCTCCACTCCC264TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica oleracea var. viridis mRNA, clone: KALE-136H12, 5' end sequence.
DK507739.1:265-284
ACCTACACCGCCTCCTCCATCTCCACTCCC265TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BNDH2DCT_UP_016_F05_12JUN2004_037 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW998280.1:274-293
ACCTACACCGCCTCCTCCATCTCCACCCCC274TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BCXiang2_FW_013_E05_07March2003_020 Brassica carinata - Xiang2 Brassica carinata cDNA 5', mRNA sequence.
EE546773.1:320-339
ACCTACACCGCCTCCTCCATCTCCACTCCC320TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BCXiang2_UP_029_G04_12March2003_010 Brassica carinata - Xiang2 Brassica carinata cDNA 5', mRNA sequence.
EE548008.1:322-341
ACCTACACCGCCTCCTCCATCTCCACTCCC322TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
EST2070 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B086E091, mRNA sequence.
EL624564.1:275-294
ACCTACACCGCCTCCTCCATCTCCACTCCC275TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BNARO4GH_T3_019_A04_24NOV2006_032 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES904421.1:221-240
ACCTACACCGCCTCCTCCATCTCCACCCCC221TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BNARO5GH_T3_011_A02_30NOV2006_016 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES906187.1:241-260
ACCTACACCGCCTCCTCCATCTCCACTCCC241TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BCXiang2_UP_039_G05_20March2003_018 Brassica carinata BCXiang2 Brassica carinata cDNA 5', mRNA sequence.
ES969390.1:149-168
ACCTACACCGCCTCCTCCATCTCCACTCCC149TCCGTCTCCGTCGAACCAATCTCCGACGGGCACGA
0130880 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV125568.1:299-318
ACCTACACCGCCTCCTCCATCTCCACTCCC299TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR042251 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-032D10 5', mRNA sequence.
EX057607.1:34-53
ACCTACACCGCCTCCTCCATCTCCACCCCC34TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR044023 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-057E07 5', mRNA sequence.
EX059379.1:139-158
ACCTACACCGCCTCCTCCATCTCCACCCCC139TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR044031 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-057F07 5', mRNA sequence.
EX059387.1:179-198
ACCTACACCGCCTCCTCCATCTCCACCCCC179TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR044286 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-062A11 5', mRNA sequence.
EX059642.1:219-238
ACCTACACCGCCTCCTCCATCTCCACCCCC219TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR044309 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-062C12 5', mRNA sequence.
EX059665.1:204-223
ACCTACACCGCCTCCTCCATCTCCACCCCC204TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR082560 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-028B09 5', mRNA sequence.
EX096270.1:271-290
ACCTACACCGCCTCCTCCATCTCCACCCCC271TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR086104 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-022H07 5', mRNA sequence.
EX099814.1:271-290
ACCTACACCGCCTCCTCCATCTCCACCCCC271TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
BR100939 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-120A10 5', mRNA sequence.
EX114649.1:271-290
ACCTACACCGCCTCCTCCATCTCCACCCCC271TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6017.
FX697191.1:276-295
ACCTACACCGCCTCCTCCATCTCCACCCCC276TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11158.
FX731082.1:278-297
ACCTACACCGCCTCCTCCATCTCCACCCCC278TCCGTCTCCGTCGAACCAATCTCCGACGGTCACGACTTCATCCCCATAGG
lkg35h07.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ067609.1:455-474
ACCTACACCGCCTCCTCCATCTCCACTCCC455TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica rapa subsp. pekinensis UDP-glucosyl transferase 74b1 (UGT74B1-1) mRNA, complete cds.
FJ376054.1:271-290
ACCTACACCGCCTCCTCCATCTCCACCCCC271TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica napus thiohydroximate S-glucosyltransferase mRNA, complete cds.
AF304430.1:181-200
ACCTACACCGCCTCCTCCATCTCCACTCCC181TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:55185117-55185136
ACCTACACCGCCTCCTCCATCTCCACCCCC55185117TCCGTCTCCGTCGAACCAATCTCCGACGGTCACGACTTCATCCCCATAGG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:44115634-44115653
ACCTACACCGCCTCCTCCATCTCCACTCCC44115634TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica oleracea var. botrytis UDP-glucose glucosyl transferase mRNA, complete cds.
GU584127.1:181-200
ACCTACACCGCCTCCTCCATCTCCACTCCC181TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:39011520-39011539
ACCTACACCGCCTCCTCCATCTCCACCCCC39011520TCCGTCTCCGTCGAACCAATCTCCGACGGTCACGACTTCATCCCCATAGG
Brassica rapa genome, scaffold: A09.
LR031568.1:43348048-43348067
ACCTACACCGCCTCCTCCATCTCCACCCCC43348048TCCGTCTCCGTCGAACCAATCTCCGACGGTCACGACTTCATCCCCATAGG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:53797698-53797717
ACCTACACCGCCTCCTCCATCTCCACCCCC53797698TCCGTCTCCGTCGAACCAATCTCCGACGGTCACGACTTCATCCCCATAGG
Brassica oleracea var. alboglabra cultivar Sijicutiao UDP-glucosyltransferase 74B1 (UGT74B1) mRNA, complete cds.
MW284389.1:181-200
ACCTACACCGCCTCCTCCATCTCCACTCCC181TCCGTCTCCGTCGAACCAATCTCCGACGGCCACGACTTCATCCCCATAGG
Pinus sylvestris EST, clone 6H09.
AM983180.1:230-249
ATCCCAGATTTGCCCCCGTCGCTGGCTATC230ATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAAGATTAAAGATGGC
PCO0130.C21_L09 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0130_L09 5', mRNA sequence.
GT234051.1:352-371
ATCCCAAATTTGCTCCCATCGCTGGCTATC352ATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAGGATTAAAGATGGC
PCO0136.C21_P05 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0136_P05 5', mRNA sequence.
GT237989.1:352-371
ATCCCAAATTTGCTCCCATCGCTGGCTATC352ATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAGGATTAAAGATGGC
Pinus sylvestris EST, clone WZ0APSBB6YA22FM1.
HE634471.1:412-431
ATCCCAGATTTGCCCCCGTCGCTGGCTATC412ATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAAGATTAAAGATGGC
Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH015M19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC172876.1:48389-48408
CCTATGGGGATGAAGTCGTGGCCGTCGGAG48389ATTGGTTCGACGGAGACGGAGGGGGTGGAGATGGAGGAGGCGGTGTAGGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH015D11, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC189603.1:42274-42293
CCTATGGGGATGAAGTCGTGGCCGTCGGAG42274ATTGGTTCGACGGAGACGGAGGGGGTGGAGATGGAGGAGGCGGTGTAGGT
Brassica oleracea clone BAC B16J1, complete sequence.
EU579454.1:20347-20366
CCTATGGGGATGAAGTCGTGGCCGTCGGAG20347ATTGGTTCGACGGAGACGGAGGGAGTGGAGATGGAGGAGGCGGTGTAGGT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:15085717-15085736
CCTATGGGGATGAAGTCGTGGCCGTCGGAG15085717ATTGGTTCGACGGAGACGGAGGGAGTGGAGATGGAGGAGGCGGTGTAGGT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:14608508-14608527
CCTATGGGGATGAAGTCGTGGCCGTCGGAG14608508ATTGGTTCGACGGAGACGGAGGGAGTGGAGATGGAGGAGGCGGTGTAGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCGTCTCCGTCGAACCAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCGTCTCCGTCGAACCAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.436 | 1.427 | search_plus_done; http://172.18.8.135:50400/match?q=TCCGTCTCCGTCGAACCAAT&k=0&no_gap=0&offset=0&limit=50
1.813 | 0.377 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGGTTCGACGGAGACGGA&k=0&no_gap=0&offset=0&limit=9
1.819 | 0.006 | cgi_end;

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