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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-15 15:37:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Erithacus rubecula genome assembly, chromosome: 10.
LR812113.1:29465349-29465369
TCCCTTCCAACTCAGGAAACTCTATGATTT29465349TCCTCTCTTTCTCCTCCTTGCACAATGCTCTCAGCTTGCTGTTCCACCATA
RS1AP35TFB RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW716024.1:97-117
GGCACCTTCGAGCTCGTCGCCTTCTCCTTC97TCCTCTCTTTCTCCTCCTTGCAATTCCACTTCTCAAATCATAGACAGGAAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_57251.
FX732598.1:206-226
GGCACCTTCGATCTCGTCGCCTTCTCCTTC206TCCTCTCTTTCTCCTCCTTGCAATTCCACTTCTCAAATCATAGACAGGAAA
TSA: Raphanus sativus RS05171 mRNA sequence.
JT789718.1:1324-1344
GGCACCTTCGATCTCGTCGCCTTCTCCTTC1324TCCTCTCTTTCTCCTCCTTGCAATTTCACTTCTCAAATCATAGACAGGAAA
Raphanus sativus DNA, microsatellite locus RM_1, cultivar: F1 hybrid of rat-tail radish and Harufuku.
AB608369.1:48-68
GGCACCTTCGATCTCGTCGCCTTCTCCTTC48TCCTCTCTTTCTCCTCCTTGCAATTTCACTTCTCAAATCATAGGTATGTTT
Allantophomopsis lycopodina strain ATCC 66958 chromosome 10.
CP103012.1:1762512-1762532
TTCCCCACCAGCTGCTAGTTGGTGCATTCC1762512TCCTCTCTTTCTCCTCCTTGCTCAATCGTGATACCATCTTCGACCAATTTC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:42824801-42824821
GGCACCTTCGATCTCGTCGCCTTCTCCTTC42824801TCCTCTCTTTCTCCTCCTTGCAATTTCACTTCTCAAATCATAGGTATGTTT
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:681284993-681285013
TCACCTCTCTCTCGTTGTTCAGACCTCCCC681284993TCCTCTCTTTCTCCTCCTTGCCCACCCTCACTGGCCGACAACCCTCCTTGA
Heteropelma amictum genome assembly, chromosome: 1.
OY390720.1:33109285-33109305
GCGAATCTCTCTCTTTCTTTCTCTCGCTCT33109285TCCTCTCTTTCTCCTCCTTGCGCTCCATCCGTCTTTATCTGTGTCTCGCGA
Geotrupes spiniger genome assembly, chromosome: 10.
OY390740.1:7631116-7631136
CACCTGCTCTTCTCTCCCAACACCTTTCTC7631116TCCTCTCTTTCTCCTCCTTGCTCCATCCCATCTCTTCGCAATCGTCCCATC
Pimpla rufipes genome assembly, chromosome: 12.
OZ010641.1:4328277-4328297
CTATCCCTTTGACTTCTCCCCCCTAGACCT4328277TCCTCTCTTTCTCCTCCTTGCTTTTTCCCTATTCTCCTCTTACATTTTTTG
Trachurus trachurus genome assembly, chromosome: 3.
LR991630.1:23790308-23790328
ATAGAAAAATTAAACTCAGGGAGATAAATA23790308GCAAGGAGGAGAAAGAGAGGAAAATGATAAAAGCCTTCTCTCTCTGGTCTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_7550.
FX671549.1:1639-1659
TTTCCTGTCTATGATTTGAGAAGTGGAATT1639GCAAGGAGGAGAAAGAGAGGAGAAGGAGAAGGCGACGAGATCGAAGGTGCC
Oryza minuta clone OM__Ba0084O01, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC231814.1:71280-71300
GAGATGGAGAAAGGAGGAAGAAGACCGAGG71280GCAAGGAGGAGAAAGAGAGGAGGGAGAGAGAAAAGGGGAGGAGAGTGAGGA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:10825699-10825719
AAACATACCTATGATTTGAGAAGTGAAATT10825699GCAAGGAGGAGAAAGAGAGGAGAAGGAGAAGGCGACGAGATCGAAGGTGCC
Myrica gale genome assembly, chromosome: 21.
OZ005618.1:8702291-8702311
AGATTCCAAACAAAAAAAGAGAAGAAAAGA8702291GCAAGGAGGAGAAAGAGAGGAGGGGGACGGGGACGGGGGACCGGTGGGAGG
Pimpla rufipes genome assembly, chromosome: 12.
OZ010641.1:3958193-3958213
CAAAAAATGTAAGAGGAGAATAGGGAAAAA3958193GCAAGGAGGAGAAAGAGAGGAAGGTCTAGGGGGGAGAAGTCAAAGGGATAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCTCTCTTTCTCCTCCTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCTCTCTTTCTCCTCCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.457 | 0.448 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTCTCTTTCTCCTCCTTGC&k=0&no_gap=0&offset=0&limit=50
0.567 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGGAGGAGAAAGAGAGGA&k=0&no_gap=0&offset=0&limit=39
0.571 | 0.004 | cgi_end;

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