GGGenome | Results

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2025-04-06 07:18:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Podarcis lilfordi genome assembly, chromosome: 1.
OX395126.1:58040548-58040567

TAGTTGAGAGCCCCCTGGTCCCACCCCTTC58040548TCCTCTTCCTTGCTGTTGCTGCCCACTTGCTCACCTCTTCTCTCTCTCTC

Falco punctatus genome assembly, chromosome: 10.
OY723443.1:9040308-9040327

TTCCTTGACACAAGGGTGGTCTGTCCATCC9040308TCCTCTTCCTTGCTGTTGCTTTGCTTTTCACTGCATGCGGAGCATTCTCC

Labrus bergylta genome assembly, chromosome: 5.
OZ005713.1:13081139-13081158

GACTAATGGGACTTTTAGGTTTCAGGAATC13081139TCCTCTTCCTTGCTGTTGCTTAGCTCATGTCAAACATTATTACCAATCCG

EST1186981 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1X662, mRNA sequence.
DT753132.1:152-171

ACACCGGAAAAACACCAATACTTTGAATAC152TCCTCTTCCTTGCTGTTGCTCCTCTTCCTTCCTTCAATTTCTTCTTTCAA

Secale cereale genome assembly, chromosome: 0R.
LR738716.1:12870599-12870618

CTTCTCAAAAGTCCTGCTATTGCTCTCCTC12870599TCCTCTTCCTTGCTGTTGCTGGGCACCTCCTCATGATCCATGGACAGCAG

Secale cereale genome assembly, chromosome: 0R.
LR738716.1:13652214-13652233

CTTCTCAAAAGTCCTGCTATTGCTCTCCTC13652214TCCTCTTCCTTGCTGTTGCTGGGCACCTCCTCATGATCCATGGACAGCAG

Avena eriantha genome assembly, chromosome: 6C.
OU342745.1:146687363-146687382

GTGGAACATACGTCGTTAGTACAACGAGTC146687363TCCTCTTCCTTGCTGTTGCTCACGCGTGTATTGACTTGGGCAAACTCTGC

Coelopa pilipes genome assembly, chromosome: 4.
OX376699.1:22197411-22197430

GGCCCTCAGGTGGCAGGAGTCCAACTTGTA22197411TCCTCTTCCTTGCTGTTGCTATAAGGGTTGTGAAGTCTCCCCTCGTTGTT

Crepidodera aurea genome assembly, chromosome: 3.
OX439474.1:57569350-57569369

GATGCCGGAACCTTTTTTTTCTGCCTCTAC57569350TCCTCTTCCTTGCTGTTGCTCCTGCAACAGCCGCCGTTGGCTAGGGAGTC

Aplysina aerophoba genome assembly, chromosome: 21.
OX465053.1:3141307-3141326

CTCTGGGGCTCCAACCCCTCCACTCTCTTC3141307TCCTCTTCCTTGCTGTTGCTGAAGCTGCAGTGGAGCAGGAAGTGGCAGTC

Zootoca vivipara genome assembly, chromosome: 1.
OY735902.1:13098221-13098240

CTTTGAATGTCTGGTGCAACTGCAGAGAGA13098221AGCAACAGCAAGGAAGAGGAGGAGGAGGAGGGAGGCAAAGAGGCTCTAGA

Fringilla coelebs genome assembly, chromosome: 11.
OY740735.1:12244773-12244792

ATAGTTTTTCTTTCACACCATCCCTTCAGG12244773AGCAACAGCAAGGAAGAGGAGAAAACAAAATTCCAGACTGTGTCTATTTT

Labrus mixtus genome assembly, chromosome: 7.
OY757290.1:10947464-10947483

CGGATTGGTAATAATGTTTGACATGAGCTA10947464AGCAACAGCAAGGAAGAGGAGATTCCTGAAACCTAAAACTTTTAAGTCCC

Sequence 1 from patent US 8785725.
HK037420.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCATC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

WO 2016084963-A/92: METHOD OF PRODUCING ISOPRENOID COMPOUND.
LF159674.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Sequence 100 from Patent EP3225691.
LP928443.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

WO 2017051930-A/62: Method of producing isoprenoid compound.
LX078932.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

JP 2017104099-A/7: Method of producing limonene.
LX158053.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Citrus unshiu mRNA, clone: BFC2A71, 5'-end sequence, expressed in flavedo.
DC885169.1:496-515

AGTAAGCATCTTAAAGAAATGATGATCACC496AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

UCRCS11_01C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C07, mRNA sequence.
DN617390.1:690-709

AGTAAGCATCTTAAAGAAATGATGATCACC690AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

EST1186982 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1X662, mRNA sequence.
DT753133.1:765-784

ATTGAAAGAAGAAATTGAAGAAGGAAGAGG765AGCAACAGCAAGGAAGAGGAGTATTCAAAGTATTGGTGTT

KN0AAP1YD21FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY260981.1:716-735

AGTAAGCATCTTAAAGAAATGATGATCACC716AGCAACAGCAAGGAAGAGGATGTATTTGTATCAAAGCAAACGAAGCGGGC

IC0AAA26DB05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY269374.1:707-726

AGTAAGCATCTTAAAGAAATGATGATCACC707AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

KN0AAP7YC07FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY270601.1:347-366

AGTAAGCATCTTAAAGAAATGATGATCACC347AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

IC0AAA41BE05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276516.1:714-733

AGTAAGCATCTTAAAGAAATGATGATCACC714AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-701-007-A08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY702444.1:716-735

AGTAAGCATCTTAAAGAAATGATGATCACC716AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-701-003-B06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY709517.1:381-400

AGTAAGCATCTTAAAGAAATGATGATCACC381AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-701-086-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY710750.1:307-326

AGTAAGCATCTTAAAGAAATGATGATCACC307AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-004-F06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY711170.1:585-604

AGTAAGCATCTTAAAGAAATGATGATCACC585AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-021-F01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY712627.1:186-205

AGTAAGCATCTTAAAGAAATGATGATCACC186AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-021-F07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY712632.1:186-205

AGTAAGCATCTTAAAGAAATGATGATCACC186AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-026-H10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713093.1:748-767

AGTAAGCATCTTAAAGAAATGATGATCACC748AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAAGCGGC

CS00-C3-702-034-H10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713788.1:411-430

AGTAAGCATCTTAAAGAAATGATGATCACC411AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-042-G10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY714470.1:412-431

AGTAAGCATCTTAAAGAAATGATGATCACC412AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-702-044-F09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY714621.1:719-738

AGTAAGCATCTTTAAGAAATGATGATCACC719AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGACCCAGCGAAGCGGGC

CS00-C3-702-065-G05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY716296.1:405-424

AGTAAGCATCTTAAAGAAATGATGATCACC405AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-703-068-A10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY727259.1:582-601

AGTAAGCATCTTAAAGAAATGATGATCACC582AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-704-012-B03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY729064.1:473-492

AGTAAGCATCTTAAAGAAATGATGATCACC473AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-704-030-B07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY730443.1:472-491

AGTAAGCATCTTAAAGAAATGATGATCACC472AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-704-048-B10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY731813.1:158-177

AGTAAGCATCTTAAAGAAATGATGATCACC158AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-704-087-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY734775.1:735-754

AGTAAGCATCTTAAAGAAATGATGATCACC735AGCAACAGCAAGGAAGAGGATGTATTTGGAACAGAACAAGCGAACGGGGG

CS00-C3-705-015-A12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY736340.1:185-204

AGTAAGCATCTTAAAGAAATGATGATCACC185AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-705-027-C04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY737133.1:184-203

AGTAAGCATCTTAAAGAAATGATGATCACC184AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-705-087-G08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY741676.1:714-733

AGTAAGCATCTTANAGAAATGATGATCACC714AGCAACAGCAAGGAAGAGGATGTATNGGTAGCAGAACAAGCGAAGCGGGC

CS00-C3-705-087-G09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY741677.1:713-732

AGTAAGCATCTTAAAGAAATGATGATCACC713AGCAACAGCAAGGAAGAGGATGTATTGGTACCAGAACAAGCGAAACGGGC

CS00-C3-705-107-E05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY743991.1:369-388

AGTAAGCATCTTAAAGAAATGATGATCACC369AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-700-068-E08-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY786051.1:703-722

AGTAAGCATCTTAAAGAAATGATGATCACC703AGCAACAGCAAGGAAGAGGATGTATTTGTAGCGAGAACAAGCGAAGCGGG

CR05-C3-700-120-F01-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY789319.1:315-334

AGTAAGCATCTTAAAGAAATGATGATCACC315AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-012-A05-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY793905.1:140-159

AGTAAGCATCTTAAAGAAATGATGATCACC140AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-020-D05-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY795009.1:15-34

CCACGCGTCCGACC15AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-036-H11-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY796135.1:495-514

AGTAAGCATCTTAAAGAAATGATGATCACC495AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-054-H01-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY797646.1:430-449

AGTAAGCATCTTAAAGAAATGATGATCACC430AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-055-E11-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY797712.1:154-173

AGTAAGCATCTTAAAGAAATGATGATCACC154AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-055-H01-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY797736.1:299-318

AGTAAGCATCTTAAAGAAATGATGATCACC299AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-069-D05-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY798850.1:731-750

AGTAAGCATCTTAAAGAAATGATGATCACC731AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAAAAAGCGAAACGGGG

CR05-C3-701-088-D06-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY799398.1:288-307

AGTAAGCATCTTAAAGAAATGATGATCACC288AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-088-F09-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY799424.1:419-438

AGTAAGCATCTTAAAGAAATGATGATCACC419AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

CR05-C3-701-085-H01-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY799626.1:247-266

AGTAAGCATCTTAAAGAAATGATGATCACC247AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Citrus unshiu CitMTSE2 mRNA for d-limonene synthase, complete cds.
AB110637.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Poncirus trifoliata PtLim1 mRNA for limonene synthase, complete cds.
AB363936.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCATC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGTGC

Citrus sinensis (+)-limonene synthase mRNA, complete cds.
KU746814.2:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Blumea balsamifera D-limonene mRNA, complete cds.
OQ599523.1:658-677

AGTAAGCATCTTAAAGAAATGATGATCACC658AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:29186725-29186744

AGTAAGCATCTTAAAGAAATGATGATCACC29186725AGCAACAGCAAGGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGC

Galaxea fascicularis genome assembly, chromosome: 8.
OX419342.1:23776399-23776418

GGGTTATGGGTGTAACTGAGAACCCTGTCT23776399AGCAACAGCAAGGAAGAGGAGACTACTGGTGACTTTGAGTTAATAGAATT

Conops quadrifasciatus genome assembly, chromosome: 3.
OX457079.1:29621559-29621578

AACACAAGATAACACAACACAAGCATTGCC29621559AGCAACAGCAAGGAAGAGGAACAGCAGTAACACCAGCAACATAGAGAAAA

Hydrotaea cyrtoneurina genome assembly, chromosome: 2.
OY282513.1:11449149-11449168

AAAAGTCATGACATTGACAACAAGACCAAC11449149AGCAACAGCAAGGAAGAGGAAAAGGGAAAGGGAAATATTTTGTGTATTTG

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.191 | 0.182 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTCTTCCTTGCTGTTGCT&k=0&no_gap=0&offset=0&limit=50
3.006 | 2.815 | search_minus_done; http://172.18.8.135:50400/match?q=AGCAACAGCAAGGAAGAGGA&k=0&no_gap=0&offset=0&limit=40
3.043 | 0.037 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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