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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 11:41:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1 from Patent EP1725664.
HH979388.1:119-138
ACATCATTCCTCCTGAAGAAGTTGCTAAGT119TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Sequence 5 from Patent EP1725664.
HH979392.1:74-93
ACATCATTCCTCCTGAAGAAGTTGCTAAGT74TCCTGCCTGAAACTGTTGAGGAAGGTGATTCATTCTTCTCTTAATATTTA
Sequence 2633 from patent US 9096865.
HL038278.1:86-105
ACATCATTCCTCCTGAAGAAGTTGCTAAGT86TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Sequence 2633 from Patent EP2440033.
JC300187.1:86-105
ACATCATTCCTCCTGAAGAAGTTGCTAAGT86TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Sequence 2633 from patent US 10006040.
MI841132.1:86-105
ACATCATTCCTCCTGAAGAAGTTGCTAAGT86TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Sequence 2633 from patent US 10791690.
MV738453.1:86-105
ACATCATTCCTCCTGAAGAAGTTGCTAAGT86TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Sequence 2633 from patent US 11286495.
MY951640.1:86-105
ACATCATTCCTCCTGAAGAAGTTGCTAAGT86TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
0167916 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV165181.1:237-256
ACATCATTCCTCCTGAAGAAGTTGCTAAGT237TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
BR047961 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-22A11 5', mRNA sequence.
EX063317.1:129-148
ACATCATTCCTCCTGAAGAAGTTGCTAAGT129TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
BR091597 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-047B05 5', mRNA sequence.
EX105307.1:44-63
ACATCATTCCTCCTGAAGAAGTTGCTAAGT44TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
BR103398 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-27E11 5', mRNA sequence.
EX119568.1:64-83
ACATCATTCCTCCTGAAGAAGTTGCTAAGT64TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
BR115991 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-17D11 5', mRNA sequence.
EX132161.1:64-83
ACATCATTCCTCCTGAAGAAGTTGCTAAGT64TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
BR117973 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-42F06 5', mRNA sequence.
EX134143.1:108-127
ACATCATTCCTCCTGAAGAAGTTGCTAAGT108TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF01D06, 5'-end sequence.
FY063781.1:102-121
ACATCATTCCTCCTGAAGAAGTTGCTAAGT102TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF02N13, 5'-end sequence.
FY064369.1:123-142
ACATCATTCCTCCTGAAGAAGTTGCTAAGT123TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31E03, 5'-end sequence.
FY418174.1:125-144
ACATCATTCCTCCTGAAGAAGTTGCTAAGT125TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF35A23, 5'-end sequence.
FY419552.1:123-142
ACATCATTCCTCCTGAAGAAGTTGCTAAGT123TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3411.
FX711921.1:239-258
ACATCATTCCTCCTGAAGAAGTTGCTAAGT239TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1591.
FX748968.1:224-243
ACATCATTCCTCCTGAAGAAGTTGCTAAGT224TCCTGCCTGAAACTGTTGAGGAAGGCGGATGGGAAAAATGTTGGGAAGAC
Brassica oleracea thiol methyltransferase 1 (tmt1) mRNA, complete cds.
AF387791.1:119-138
ACATCATTCCTCCTGAAGAAGTTGCTAAGT119TCCTGCCTGAAACTGTTGAGGAAGGTGGATGGGAAAAATGTTGGGAAGAC
Brassica oleracea thiol methyltransferase 1 (tmt1) gene, complete cds.
AF387793.1:74-93
ACATCATTCCTCCTGAAGAAGTTGCTAAGT74TCCTGCCTGAAACTGTTGAGGAAGGTGATTCATTCTTCTCTTAATATTTA
Shewanella algae TUM4442 DNA, complete genome.
AP024610.1:3725871-3725890
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3725871TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae TUM17382 DNA, complete genome.
AP024614.1:3924468-3924487
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3924468TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae TUM17384 DNA, complete genome.
AP024616.1:3783961-3783980
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3783961TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain CCU101 chromosome, complete sequence.
CP018456.1:557323-557342
GTGGCGGTAAGCCGAATGTGGCCGCTGATC557323TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain KC-Na-R1 chromosome, complete genome.
CP033575.1:4178589-4178608
GTGGCGGTAAGCCGAATGTGGCCGCTGATC4178589TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain A59 chromosome, complete genome.
CP068227.1:3706802-3706821
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3706802TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain CECT 5071 chromosome, complete genome.
CP068230.1:3826820-3826839
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3826820TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain CCU4051 chromosome.
CP078513.1:557323-557342
GTGGCGGTAAGCCGAATGTGGCCGCTGATC557323TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain CCU4052 chromosome.
CP078515.1:4177668-4177687
GTGGCGGTAAGCCGAATGTGGCCGCTGATC4177668TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain CCU4054 chromosome.
CP078519.1:479372-479391
GTGGCGGTAAGCCGAATGTGGCCGCTGATC479372TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain B2215466 chromosome, complete genome.
CP110338.1:3832456-3832475
GTGGCGGTAAGCCGAATGTGGCCGTTGATC3832456TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Shewanella algae strain MCCC 1A11468 chromosome, complete genome.
CP129401.1:3775682-3775701
GTGGCGGTAAGCCGAATGTGGCCGCTGATC3775682TCCTGCCTGAAACTGTTGAGTCGCTCCAACTGCTCGGCTATCTGACCAAA
Onychomys torridus genome assembly, chromosome: 23.
LR877210.1:56490924-56490943
AAAACAAAACACTCTGCCCACAACCTGAGC56490924CTCAACAGTTTCAGGCAGGATCTAGAAATTCTTTTCTTCTGAGCTCTCCA
Onychomys arenicola genome assembly, chromosome: 23.
OX460369.1:60914678-60914697
AAAACAAAACACTCTGCCCACAACCTGAGC60914678CTCAACAGTTTCAGGCAGGATCTAGAAATTCTTTTCTTCCGAGCTCTCCA
Onychomys arenicola genome assembly, chromosome: 23.
OX460464.1:59177228-59177247
AAAACAAAACACTCTGCCCACAACCTGAGC59177228CTCAACAGTTTCAGGCAGGATCTAGAAATTCTTTTCTTCCGAGCTCTCCA
Onychomys torridus genome assembly, chromosome: 23.
OX460904.1:56490924-56490943
AAAACAAAACACTCTGCCCACAACCTGAGC56490924CTCAACAGTTTCAGGCAGGATCTAGAAATTCTTTTCTTCTGAGCTCTCCA
Oryzias latipes strain HNI chromosome 13.
CP020791.1:1717313-1717332
AGTTTGTTTGCAGCTAAAGGTCGTGTTTGG1717313CTCAACAGTTTCAGGCAGGAGTCGGTCCGAGAACTGCTACGTCATTCTTT
Anabas testudineus genome assembly, chromosome: 6.
LR132047.1:16792907-16792926
CTTAAATTTCACTTGCATAACATGACTCCA16792907CTCAACAGTTTCAGGCAGGATATTTACACAAGGCATACAGAGGAGCATCC
Zootoca vivipara genome assembly, chromosome: 1.
OY735902.1:22712366-22712385
TGTCCACTACAACCTTGACTAGCAGCAGTT22712366CTCAACAGTTTCAGGCAGGAGTCTCTCGCAGCCCTACCCGGAGAAGCTGG
BOIBS86TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIBS86, genomic survey sequence.
CC959456.1:95-114
TAAATATTAAGAGAAGAATGAATCACCTTC95CTCAACAGTTTCAGGCAGGAACTTAGCAACTTCTTCAGGAGGAATGATGT
Brassica rapa subsp. pekinensis clone KBrB039A22, complete sequence.
CU740082.1:126980-126999
TAAATATTAAGAGAAGAATGAATCACCTTC126980CTCAACAGTTTCAGGCAGGAACTTAGCAACTTCTTCAGGAGGAATGATGT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:4434271-4434290
TAAATATTAAGAGAAGAATGAATCACCTTC4434271CTCAACAGTTTCAGGCAGGAACTTAGCAACTTCTTCAGGAGGAATGATGT
Brassica napus genome assembly, chromosome: C04.
HG994368.1:4178611-4178630
TAAATATTAAGAGAAGAATGAATCACCTTC4178611CTCAACAGTTTCAGGCAGGAACTTAGCAACTTCTTCAGGAGGAATGATGT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:4148112-4148131
GTAAATATTAAGAGAAGAATGAATCACCTC4148112CTCAACAGTTTCAGGCAGGAACTTAGCAACTTCTTCAGGAGGAATGATGT
Shewanella algae TUM17386 DNA, complete genome.
AP024617.1:4453318-4453337
TTTGGTCAGATAGCCGAGCAGTTGGAGCGA4453318CTCAACAGTTTCAGGCAGGAGATCAGCGGCCACATTCGGCTTACCGCCAC
Shewanella algae strain VGH117 chromosome, complete genome.
CP032415.1:3875790-3875809
TTTGGTCAGATAGCCGAGCAGTTGGAGCGA3875790CTCAACAGTTTCAGGCAGGAGATCAGCGGCCACATTCGGCTTACCGCCAC
Shewanella algae strain RQs-106 chromosome, complete genome.
CP046378.1:1109787-1109806
TTTGGTCAGATAGCCGAGCAGTTGGAGCGA1109787CTCAACAGTTTCAGGCAGGAGATCAGCGGCCACATTCGGCTTACCGCCAC
Shewanella algae strain 18064-CSB-B-B chromosome, complete genome.
CP047422.1:2743577-2743596
TTTGGTCAGATAGCCGAGCAGTTGGAGCGA2743577CTCAACAGTTTCAGGCAGGAGATCAGCGGCCACATTCGGCTTACCGCCAC
Shewanella algae strain CCU4053 chromosome.
CP078518.1:3875790-3875809
TTTGGTCAGATAGCCGAGCAGTTGGAGCGA3875790CTCAACAGTTTCAGGCAGGAGATCAGCGGCCACATTCGGCTTACCGCCAC

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