GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:25:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene21075_B1 mRNA sequence.
JV331021.1:900-919
GGGATTGATATGCAGGCAGATACTTGGGGC900TCCTGTGGAATCGTGTTCAACGAAAATATGGTGCAGTATCAAGTAGATCT
TSA: Musa acuminata AAA Group Unigene19020_NK1 mRNA sequence.
JV415554.1:805-824
GGGATTGATATGCAGGCAGATACTTGGGGC805TCCTGTGGAATCGTGTTCAACGAAAATATGGTGCAGTATCAAGTAGATCT
Seq_ct_1716 MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN239973.1:242-261
GGGATTGATATGCAGGCAGATACTTGGGGC242TCCTGTGGAATCGTGTTCAACGAAAATATGGTGCAGTATCAAGTAGATCT
Musa troglodytarum cultivar karat chromosome 1.
CP097502.1:15527996-15528015
AGATCTACTTGATGCTGCACCATATTTTCG15527996TTGAACACGATTCCACAGGAGCCCCAAGAATCTGCCTGCATATCAATCCC
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:11262898-11262917
AGATCTACTTGATACTGCACCATATTTTCG11262898TTGAACACGATTCCACAGGAGCCCCAAGTATCTGCCTGCATATCAATCCC
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:11259084-11259103
AGATCTACTTGATACTGCACCATATTTTCG11259084TTGAACACGATTCCACAGGAGCCCCAAGTATCTGCCTGCATATCAATCCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:3480330-3480349
AGATCTACTTGATACTGCACCATATTTTCG3480330TTGAACACGATTCCACAGGAGCCCCAAGTATCTGCCTGCATATCAATCCC
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:3609383-3609402
AGATCTACTTGATACTGCACCATATTTTAG3609383TTGAACACGATTCCACAGGAGCCCCAAGTATCTGCCTGCATATCAATCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCTGTGGAATCGTGTTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCTGTGGAATCGTGTTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.182 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTGTGGAATCGTGTTCAA&k=0&no_gap=0&offset=0&limit=50
0.215 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TTGAACACGATTCCACAGGA&k=0&no_gap=0&offset=0&limit=47
0.218 | 0.003 | cgi_end;

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