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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:45:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus vulgaris genome assembly, chromosome: X.
LR738621.1:20281420-20281439
CCAGGAAGTCTCATCTTCTATGATGCATAA20281420TCCTTGCCTTTCATTTCCTTGCACACTAACCCTCCATGCCCCCACTGGTG
Onychomys torridus genome assembly, chromosome: 21.
LR877208.1:41718278-41718297
CAGCTAGCTGGCCAGCTTTGGCCAGGTTTG41718278TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACAGTGTTGCATC
Acomys russatus genome assembly, chromosome: 24.
LR877235.1:587713-587732
AGTTTTTATTCAGGTTGGACAAACCGGTGT587713TCCTTGCCTTTCATTTCCTTATTTTTTCCTTGTTGTACTTTAATTGATCC
Onychomys arenicola genome assembly, chromosome: 21.
OX460367.1:57484612-57484631
TGGCTGGCCTGTGAGCTTTGGCCAGGTTTG57484612TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACTGTGTTGCATC
Onychomys leucogaster genome assembly, chromosome: 21.
OX460391.1:32518486-32518505
TAGCTGGCCTGTGAGCTTTGGCCAGGTTTG32518486TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACAGTGTTGCATG
Onychomys leucogaster genome assembly, chromosome: 21.
OX460438.1:32682997-32683016
TAGCTGGCCTGTGAGCTTTGGCCAGGTTTG32682997TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACAGTGTTGCATC
Onychomys arenicola genome assembly, chromosome: 21.
OX460462.1:53066566-53066585
TGGCTGGCCTGTGAGCTTTGGCCAGGTTTG53066566TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACAGTGTTGCATC
Onychomys torridus genome assembly, chromosome: 21.
OX460902.1:41718278-41718297
CAGCTAGCTGGCCAGCTTTGGCCAGGTTTG41718278TCCTTGCCTTTCATTTCCTTACAGGAGTGTTGGGAAGACAGTGTTGCATC
Micromys minutus genome assembly, chromosome: 1.
OZ004780.1:61473359-61473378
CCTTTCAGTCTGTCCCTGTGGGGCCAGCCC61473359TCCTTGCCTTTCATTTCCTTGATTGGAGATTGTATCCCTGAATAGAGCTT
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:293897752-293897771
CCTTTCACTTTACTCTTTTCTTTTTATCTT293897752TCCTTGCCTTTCATTTCCTTTTCTCCTAATCAAACCTAGCAAAACCAACA
Salmo trutta genome assembly, chromosome: 6.
LR584406.1:42110956-42110975
ACCTCTCGTGATATCGTATGTACGGTATAT42110956TCCTTGCCTTTCATTTCCTTCTACAGGACCACCACCATTCCACTACCTTT
Taurulus bubalis genome assembly, chromosome: 3.
OU342713.1:42142243-42142262
TCACTTCACTTCCTTTCCTTGTCTTTCTTT42142243TCCTTGCCTTTCATTTCCTTTCCTTGTCTTTCTTTTCCTTTCTTTTCCTT
Phalacrocorax aristotelis genome assembly, chromosome: Z.
OX451226.1:74856772-74856791
CCCTTCCCTTTCCTTTCATTTCCTTGCCTT74856772TCCTTGCCTTTCATTTCCTTGGCTTTCCTTGCCTTTCCTTGCCTTTCCTT
Phalacrocorax aristotelis genome assembly, chromosome: Z.
OX451226.1:74864234-74864253
CCCTTCCCTTTCCTTTCATTTCCTTGCCTT74864234TCCTTGCCTTTCATTTCCTTGGCTTTCCTTACCTTTCCTTGCCTTTCCTT
Phalacrocorax aristotelis genome assembly, chromosome: Z.
OX451226.1:74898982-74899001
TGCTTTTTCTTGCCTTGCCTTGCTTTCCTT74898982TCCTTGCCTTTCATTTCCTTTACGTTTTTTGCCTTTTCTTCCCATGACTT
EST0156 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_14_38.M13+_F05.ab1, mRNA sequence.
FE861297.1:33-52
TCGGCCATTACGGCCGGGGATCTCAACCTC33TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Camellia sinensis mRNA, clone: RT27D11, unspecified EST, sequenced using T7 primer, expressed in roots.
FS950291.1:12-31
ATCTCAATCTC12TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTCTCTCTCAAGCTCTCTCT
Camellia sinensis mRNA, clone: RT32F03, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS951147.1:12-31
ATCTCAATCTC12TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Camellia sinensis mRNA, clone: YL07F11, 5' end sequence, expressed in young leaves.
FS959066.1:6-25
ATCTC6TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTCTCCCTCTCTCTCTCTCT
EST1472 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_14_01.M13+_A01.ab1, mRNA sequence.
GE651145.1:33-52
TCGGCCATTACGGCCGGGGATCTCAACCTC33TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
EST3288 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_83.M13+_C11, mRNA sequence.
GE652961.1:33-52
TCGGCCATTACGGCCGGGGATCTCAATCTC33TCCTTGCCTTTCATTTCCTTAGCTCTCTCTCTTTCTCTCTCTCTCTCTCT
Rattus norvegicus DNA, BAC clone: RNB1-024H19, 3'end.
DH525514.1:580-599
CTTTCTCTTTCATTTCTCCCTATGCTCCCC580TCCTTGCCTTTCATTTCCTTCTTGCTTCCTTCCATCCCACCCTTCACCAA
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:104024625-104024644
CCCTCTTCTTACTTACATACGAAGCCTCGT104024625TCCTTGCCTTTCATTTCCTTCAATTATCCATGATTTAAAGGAAATGAAAT
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:104057678-104057697
CCCTCTTCTTACTTACATACGAAGCCTCGT104057678TCCTTGCCTTTCATTTCCTTCAATTATCCATGATTTAAAGGAAATGAAAT
Asterias rubens genome assembly, chromosome: 4.
LR699095.1:22481319-22481338
TCCTTTCCTTTCCTTTCCTTGCCTTTCCCT22481319TCCTTGCCTTTCATTTCCTTGCCTTTCCTTGCCTTTTCTTTCCTTGCCTT
Chironomus riparius genome assembly, chromosome: 3.
OU895879.1:44728922-44728941
GATGCAAGATTTCTTATGAAACGTAAGGCA44728922TCCTTGCCTTTCATTTCCTTAAAAGGTTACAAAATGATTTCAGTTGGATG
Myopa tessellatipennis genome assembly, chromosome: 2.
OX031315.1:10468787-10468806
TCCTTTCCTTTCCTTTCATTTCCTTTCATT10468787TCCTTGCCTTTCATTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTTTCCAT
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:227893077-227893096
TTCGAAATAAAATTAAAATACTTACAATGG227893077TCCTTGCCTTTCATTTCCTTTCCATTTCACTCGTAAGTAAAAGAAATGCT
Macrophya alboannulata genome assembly, chromosome: 5.
OX451210.1:2072819-2072838
TTCGCGGAGATTTTTTCTGTCCCAGGGGAT2072819TCCTTGCCTTTCATTTCCTTTTTCGAACTCTCTTTCTTTCCCTTTCCCAC
Ricordea florida genome assembly, chromosome: 3.
OX453274.1:3643282-3643301
CCAAATGCTATTAAAAATAATTCAATTTGT3643282TCCTTGCCTTTCATTTCCTTTAAAACAATATTATACACACTAAAGACCAT
Merzomyia westermanni genome assembly, chromosome: 2.
OX465289.1:21471730-21471749
CCTCTCCTTTCCTTTTAATTGCCTTTCCGT21471730TCCTTGCCTTTCATTTCCTTCCCTTTCCTTTCTTTTCCTTTCTTTTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53093235-53093254
TCCTTTCATTGCCTTTTATTTCCTTTCCTT53093235TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53101704-53101723
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53101704TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTCTCTTTTATTTTAATT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53110056-53110075
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53110056TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTCTCTTTTATTTTAATT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53117586-53117605
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53117586TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCATTTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53117853-53117872
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53117853TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCATTTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53126573-53126592
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53126573TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53134989-53135008
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53134989TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTCTCTTTTATTTTAATT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53142197-53142216
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53142197TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTTTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53142494-53142513
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53142494TCCTTGCCTTTCATTTCCTTTTATTTCCTTTACTTTCCTTCCCTTTCCTG
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53143240-53143259
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53143240TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTTTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53143542-53143561
TCCTTTCATTGCCGTTTATTTCCTTTCCTT53143542TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTTTCATT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53160063-53160082
CCCTTTCATTGGCTTTTATTTCCTTTCCCT53160063TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53165472-53165491
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53165472TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53167505-53167524
TCCTTTCATTGCCTTTTATTTCCTTTCCTT53167505TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCCTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53175941-53175960
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53175941TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53179713-53179732
TCCTTTCATTGGCTTTTATTTCCTTTCCTT53179713TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTCTCTTT
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:53181524-53181543
TCCTTTCATTGCCTTTTATTTCCTTTCCTT53181524TCCTTGCCTTTCATTTCCTTTTATTTCCTTTCCTTTCCTTTCCTTTCCTC
Sciurus carolinensis genome assembly, chromosome: X.
LR738601.1:111655185-111655204
CACCAGTGGGAGCATGGAGAGCTAGTGTGC111655185AAGGAAATGAAAGGCAAGGATTATGCATCATAGAAGATGAGACTTCCTGG
Arvicola amphibius genome assembly, chromosome: 17.
LR862397.2:4943360-4943379
AAACCCTGTTTGGGAAAAAAAAGGAAAGGA4943360AAGGAAATGAAAGGCAAGGAAAGGAGGAAAGAAAGAAAGAAAGAAAGAAA
Myripristis murdjan genome assembly, chromosome: 3.
LR597552.1:39037195-39037214
GAATAAGAGAGGAAGAACAAAAGAGGAGAC39037195AAGGAAATGAAAGGCAAGGAGAGGAGGACAGAGGAAAGGAAATGAGTGAA
Danio kyathit genome assembly, chromosome: 4.
LR812522.1:12420491-12420510
AAAGGAAAGAAAAGGAAACATGAAGAAGGA12420491AAGGAAATGAAAGGCAAGGAAAGATGAAGAAGGAAAGGAAAGGAAAGGAA
CCAG419.g6 CCAG Petrolisthes cinctipes heart, gills, whole crab (N) Petrolisthes cinctipes cDNA clone CCAG419 3', mRNA sequence.
FE768128.1:76-95
AAATATTAAACATAAAAAAAATTTGATCAC76AAGGAAATGAAAGGCAAGGAAGGAAATCCATAAACTAACACAAAGTGTCG
CCAG18725.g1 CCAG Petrolisthes cinctipes heart, gills, whole crab (N) Petrolisthes cinctipes cDNA clone CCAG18725 3', mRNA sequence.
FE792415.1:72-91
AATATTAAACATAAAAAAAAATTTGATCAC72AAGGAAATGAAAGGCAAGGAAGGAAATCCATAAACTAACACAAAGTGTCG
Rattus norvegicus clone CH230-229P8, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC107092.5:209802-209821
TTGGTGAAGGGTGGGATGGAAGGAAGCAAG209802AAGGAAATGAAAGGCAAGGAGGGGAGCATAGGGAGAAATGAAAGAGAAAG
Rattus norvegicus clone CH230-13I14, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC113692.5:49652-49671
TTGGTGAAGGGTGGGATGGAAGGAAGCAAG49652AAGGAAATGAAAGGCAAGGAGGGGAGCATAGGGAGAAATGAAAGAGAAAG
Warburgia ugandensis isolate CL-2023a chromosome 6.
CP141131.1:37322201-37322220
GGAGAAAGAAGGGTGAAAGAGATGAGAAGA37322201AAGGAAATGAAAGGCAAGGAATTCAAGGATTTCAATGAACAACTAACTTG
Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:124710016-124710035
AAGAGTTGAGGAAATGTTTAGATAGAAAAG124710016AAGGAAATGAAAGGCAAGGAGGGATACAAAGGGCGAAGAGAGAAAACAAA
Alisma plantago-aquatica genome assembly, chromosome: 6.
OY856414.1:463679210-463679229
ATTTCTTTTCCTTTAAATCATGGATAATTG463679210AAGGAAATGAAAGGCAAGGAAGTAGGCTTCGTATGTAAGGAAGAAGAGGG
Megasphaera hexanoica strain MH chromosome, complete genome.
CP011940.1:2749352-2749371
GTCCTGCTGGCCGGCCTCTATTTCTCCAAG2749352AAGGAAATGAAAGGCAAGGAATTCTTCAAGGGCGACGGCACTATCCCCTG
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:5899774-5899793
AGCATTTCTTTTACTTACGAGTGAAATGGA5899774AAGGAAATGAAAGGCAAGGACCATTGTGTGTATTTTAATTTCATTTCGAA
Brachypalpus laphriformis genome assembly, chromosome: 3.
OX246755.1:34741267-34741286
AGCATTTCTTTCACTTATGAGTGAAATGGA34741267AAGGAAATGAAAGGCAAGGACCATTGTATGTATTTTAACTTTATTTCGAA
Merzomyia westermanni genome assembly, chromosome: 1.
OX465288.1:208572830-208572849
AGGGAAAGGAAAGAAAAGGAAAGGAAACGA208572830AAGGAAATGAAAGGCAAGGAAAGGAAAGGAAGGAAAAGGAAATTAAAGTA
Merzomyia westermanni genome assembly, chromosome: 5.
OX465292.1:137166586-137166605
AAATAATTGAAAGGAAAGGAAAGTAAAGGA137166586AAGGAAATGAAAGGCAAGGAAAGACAAGGAAAAGAAAGAAAGGAAAGGAA
Chorisops tibialis genome assembly, chromosome: 1.
OY770262.1:85398124-85398143
AAACTCTGAAATGTGGAAAAAAAAGGAGGA85398124AAGGAAATGAAAGGCAAGGAGAGAGAATCAACAAGTCCGTAGCCGATATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCTTGCCTTTCATTTCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCTTGCCTTTCATTTCCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.755 | 0.747 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTTGCCTTTCATTTCCTT&k=0&no_gap=0&offset=0&limit=50
1.047 | 0.292 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGAAATGAAAGGCAAGGA&k=0&no_gap=0&offset=0&limit=2
1.058 | 0.011 | cgi_end;

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