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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 19:02:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Danio aesculapii genome assembly, chromosome: 12.
LR812518.1:17608926-17608947
TAGAACATTGTATTGTGTCTGGGTATGAAT17608926TCCTTGGTTGATCTGGAACTGAGCTTTGGGTCACTGTCCTGCTGAAACATCC
OL1047F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1047, mRNA sequence.
EH413890.1:114-135
CTTGCCTATAACCAGTTTAGCTCTAGCATC114TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
OL2515F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2515, mRNA sequence.
EH416784.1:204-225
CTTGCCTATAACCAGTTTAGCTCTAGCATC204TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
OL2872F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2872, mRNA sequence.
EH417506.1:176-197
CTTGCCTATAACCAGTTTAGCTCTAGCATC176TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
OL6887F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6887, mRNA sequence.
EH425150.1:113-134
CTTGCCTATAACCAGTTTAGCTCTAGCATC113TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
OL9586F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9586, mRNA sequence.
EH430339.1:110-131
CTTGCCTATAACCAGTTTAGCTCTAGCATG110TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
RS2DC07JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY934025.1:228-249
CTTGCCTATAACCAGTTTGGCTCTAGCATC228TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
RS2EJ81JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY937124.1:217-238
CTTGCCTATAACCAGTTTGGCTCTAGCATC217TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
RR1FG62JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD530970.1:232-253
CTTGCCTATAACCAGTTTGGCTCTAGCATC232TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCC
RR3EM28JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD544824.1:146-167
CTTGCCTATAACCAGTTTGGCTCTAGCATC146TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
RS3GU26JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD952999.1:227-248
CTTGCCTATAACCAGTTTGGCTCTAGCATC227TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
TSA: Raphanus sativus RS17814 mRNA sequence.
JT802361.1:291-312
CTTGCCTATAACCAGTTTGGCTCTAGCATC291TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
odh60f07.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH970705.1:226-247
ATCACTTGCCTATAACCAAGCTCTAGCATC226TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:46332282-46332303
CTTGCCTATAACCAGTTTAGCTCTAGCATC46332282TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:46361869-46361890
CTTGCCTATAACCAGTTTAGCTCTAGCATC46361869TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGTCATCAACAGC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:6237683-6237704
ATCACTTGCCTATAACCAAGCTCTAGCATC6237683TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:46769087-46769108
CTTGCCTATAACCAGTTTAGCTCTAGCATC46769087TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:46803421-46803442
CTTGCCTATAACTAGTTTAGCTCTAGCATC46803421TCCTTGGTTGATCTGGAACTGATCTCCTAGTCCAAAATGAGCCATCAACAGC
Brassica oleracea var. viridis mRNA, clone: KALE-009I22, 3' end sequence.
DK518831.1:595-616
GCTGTTGATGGCTCATTTTGGACTAGGAGA595TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTGGTTATAGGCAAG
OL2872R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2872, mRNA sequence.
EH417479.1:279-300
GCTGTTGATGGCTCATTTTGGACTAGGAGA279TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTGGTTATAGGCAAG
RR1FG62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD535277.1:18-39
CATTTTGGACTAGGAGA18TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCCAAACTGGTTATAGGCAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_16423.
FX659763.1:2156-2177
GCTGTTGATGGCTCATTTTGGACTAGGAGA2156TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCCAAACTGGTTATAGGCAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10612.
FX736696.1:2612-2633
GCTGTTGATGGCTCATTTTGGACTAGGAGA2612TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCCAAACTGGTTATAGGCAAG
oeh12a04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH999295.1:507-528
GCTGTTGATGGCTCATTTTGGACTAGGAGA507TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTGGTTATAGGCAAG
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:15998534-15998555
GCTGTTGATGGCTCATTTTGGACTAGGAGA15998534TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTAGTTATAGGCAAG
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:16014578-16014599
GCTGTTGATGGCTCATTTTGGACTAGGAGA16014578TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTGGTTATAGGCAAG
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:16032857-16032878
GCTGTTGATGGCTCATTTTGGACTAGGAGA16032857TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCTAAACTGGTTATAGGCAAG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:18794995-18795016
GCTGTTGATGGCTCATTTTGGACTAGGAGA18794995TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCCAAACTGGTTATAGGCAAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:18794995-18795016
GCTGTTGATGGCTCATTTTGGACTAGGAGA18794995TCAGTTCCAGATCAACCAAGGAGATGCTAGAGCCAAACTGGTTATAGGCAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCTTGGTTGATCTGGAACTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCTTGGTTGATCTGGAACTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.953 | 0.944 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTTGGTTGATCTGGAACTGA&k=0&no_gap=0&offset=0&limit=50
1.274 | 0.322 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGTTCCAGATCAACCAAGGA&k=0&no_gap=0&offset=0&limit=32
1.282 | 0.007 | cgi_end;

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