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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:58:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Musa troglodytarum cultivar karat chromosome 8.
CP097510.1:62556448-62556467
TCTTTCAAATTCTTTGCTGGGTCAGTGAAG62556448TCGAACACAACACAGCACAAATCCAACTTTCGCAAGAACAAGCTCTGCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 8.
CP126377.1:1099056-1099075
TCCTTCAAGTTCTTTGCCGGGTCAGTGAAG1099056TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 19.
CP126388.1:1108021-1108040
TCTTTCAAGTTCTTTGCCGGGTCAGTGAAG1108021TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A08.
HG996472.1:1058234-1058253
TCCTTCAAGTTCTTTGCCGGGTCAGTGAAG1058234TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT
Musa schizocarpa genome assembly, chromosome: S08.
LS990922.1:1146284-1146303
TCTTTCAAGTTCTTTGCCGGGTCAGTGAAG1146284TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:157113712-157113731
AAATTCGACAATACAAGGATTTATTAAATC157113712TCGAACACAACACAGCACAAAATCGTGTTTTTTACTACCATAAACACGAG
Berberis vulgaris genome assembly, chromosome: 6.
OY747129.1:91058651-91058670
ACAATGCAAACGCCATTGCAGAATCTCTGA91058651TCGAACACAACACAGCACAACCATGGCAGAAGTCACCTCTCCTGACATCG
Berberis vulgaris genome assembly, chromosome: 9.
OY747132.1:27142568-27142587
ACAACGCAAACGCCATTGCATAATCTCTTA27142568TCGAACACAACACAGCACAACCATGGCAGAAGTCGCCTTTCCTGACGTCG
Vaccinium vitis-idaea genome assembly, chromosome: 8.
OY978222.1:39536649-39536668
TCTTTCAAATTCTTTGTTGGATCAGTGAAG39536649TCGAACACAACACAGCACAAGTTCAGCTTTTTGACAAACAAGTTCTGCTT
Sarcophaga variegata genome assembly, chromosome: 4.
OW026361.1:80748856-80748875
CCCAAAGTGCTTCTCATGAATATTCCAATG80748856TCGAACACAACACAGCACAACAGTTTAATTACCCATGTAGCAGGAACAAG
Sarcophaga subvicina genome assembly, chromosome: 3.
OW388082.2:74043756-74043775
CCCAAAGTGCTTCTCATGAATATTCCAATG74043756TCGAACACAACACAGCACAACAGTTTAATTACCCATGTAGCAGGAATCAG
Leucoma salicis genome assembly, chromosome: 17.
OX411820.1:5125970-5125989
TAATCACAGACGTTAAGTTTGAATGTGTTA5125970TCGAACACAACACAGCACAATCAGGAGCAATTGTCACGATTACTGAATTG
Aphrophora alni genome assembly, chromosome: X.
OY740765.1:126110903-126110922
TGTCTGTACTTTTTGTCGTCTGTGTAGCGG126110903TCGAACACAACACAGCACAAACACGTGGACAGATTTTAGTGAAATGGGTG
M54C3STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone M54C3 5', mRNA sequence.
BE524785.1:134-153
AAACAGAACTTGTTTGTGAGAAAACTCAGC134TTGTGCTGTGTTGTGTTCGATTTCTCGGATCCAACGAAAAACGTTAAGGA
TSA: Musa acuminata AAA Group Unigene78395_B1 mRNA sequence.
JV328178.1:356-375
AAGCAGAGCTTGTTCATGCGAAAGTTGGAT356TTGTGCTGTGTTGTGTTCGACTTCACTGACCCGGCAAAGAACTTGAAGGA
TSA: Musa acuminata AAA Group Unigene82724_NK1 mRNA sequence.
JV442876.1:356-375
AAGCAGAGCTTGTTCATGCGAAAGTTGGAT356TTGTGCTGTGTTGTGTTCGACTTCAC
Eustoma grandiflorum DNA, chromosome 1, draft genome sequence.
AP025040.1:218060-218079
AAGCAGAATTTATTCATTAAGAAGGTCAGT218060TTGTGCTGTGTTGTGTTCGACTTCACTGACCCGACAAAAGATTTGAAAGA
Cenchrus americanus genome assembly, chromosome: PMC23DB6.
OX387244.1:71698344-71698363
AAGCCCAACCTGTTTGTCAGCAAGGTGAGC71698344TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA
Berberis vulgaris genome assembly, chromosome: 5.
OY747128.1:28197390-28197409
CGACGTCAGGAGAGGCGACTTCTGCCATGG28197390TTGTGCTGTGTTGTGTTCGATCAGAGATTCTGCAATGGCGTTTGCGTTGT
Berberis vulgaris genome assembly, chromosome: 9.
OY747132.1:5738235-5738254
CGACGTCAGTAGAGGCGACTTCTGCCATGG5738235TTGTGCTGTGTTGTGTTCGATCAGAGATTCTGCAATGGCGTTTGCGTTGT
Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001402.1:76116917-76116936
AAGCCCAACCTGTTTGTCAGCAAGGTGAGC76116917TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA
Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001410.1:76694108-76694127
AAGCCCAACCTGTTTGTCAGCAAGGTGAGC76694108TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA
Coremacera marginata genome assembly, chromosome: 3.
OU612045.1:37067505-37067524
TTATTAAGTAAAAGTTTTTAAATTCACTAG37067505TTGTGCTGTGTTGTGTTCGAGTTGTGCTGCAATGAGCTATAGAGAAATTT
Coremacera marginata genome assembly, chromosome: 4.
OU612046.1:166037068-166037087
CGCCATTAAATTTTTTTATAAATTCGGAAA166037068TTGTGCTGTGTTGTGTTCGAGATGTGCTGCAATGTGCCGTAGCGAGTATT
Stratiomys singularior genome assembly, chromosome: 5.
OX940881.1:26475046-26475065
AGCAACAAAGCAAAAAATCTGCCATAATCA26475046TTGTGCTGTGTTGTGTTCGATGTGAGGAAGCTCGTAGCGAACCGCAACTT
Plemyria rubiginata genome assembly, chromosome: 8.
OY754913.1:12125755-12125774
TACAGTGATACCAATCCGTCGATAAGTGCC12125755TTGTGCTGTGTTGTGTTCGATGACCGAATGTTGGTAAGTTTTATTCGTGA
Clepsis dumicolana genome assembly, chromosome: 25.
OY829530.1:7672119-7672138
CAAGTGACGTGTGTTATTTTTTAGACAATA7672119TTGTGCTGTGTTGTGTTCGAATTGTGTACATAATGTTCAGGTATGCTTTG
Pogonocherus hispidulus genome assembly, chromosome: 3.
OZ004694.1:24677106-24677125
CAACCTTTTCGATTTTTGAAAAAATGATTC24677106TTGTGCTGTGTTGTGTTCGACTTGTGCTGTTTTGTACCGTTGTCTGACTT
Tipula lateralis genome assembly, chromosome: 2.
OZ010737.1:121844538-121844557
TTATGCTTCTGGAGAAAACAATTTCGTCTG121844538TTGTGCTGTGTTGTGTTCGATGACTGTGAGAAACAAACAAAAGTGTATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGAACACAACACAGCACAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGAACACAACACAGCACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.169 | 0.161 | search_plus_done; http://172.18.8.135:50400/match?q=TCGAACACAACACAGCACAA&k=0&no_gap=0&offset=0&limit=50
0.291 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGCTGTGTTGTGTTCGA&k=0&no_gap=0&offset=0&limit=37
0.302 | 0.011 | cgi_end;

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