GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:35:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Meles meles genome assembly, chromosome: 7.
OV277447.1:116993489-116993508
TCCCTCTTCATAGTTCTTGACATTTGTTTT116993489TCCTCTGAAAATTACCTCGACCCATAGTGTTTTCCTCCTTGTGCCATTTG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:25826960-25826979
ACTGATTAAATTGACTACGGTTGTTGTAGT25826960TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTTTGAGAAGCC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:26844026-26844045
TACGGTTGTTGTAGTTCCTCTGAGAGTTGT26844026TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:33620257-33620276
TACGGTTGTTGTAGCTCCTCTGAGAGTTGT33620257TCCTCTGAAAATTACCTCGATTATTGCTATTGTCATAATTCTAAGAATCA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:24868944-24868963
ACTGATTAAATTGACTACGGTTGTTGTAGT24868944TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTTTGAGAAGCC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:25342287-25342306
TACGGTTGTTGTAGTTCCTCTGAGAGTTGT25342287TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:26625644-26625663
ACCGATTGTATTGACTACGGTTGTTGTAGT26625644TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
UNVERIFIED: Malus fusca sequence.
ON000502.1:137070-137089
TACGGTTGTTGTAGCTCCTCTGAGAGTTGT137070TCCTCTGAAAATTACCTCGATTATTGCTATTGTCAGAATTCTAAGAAGCA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:26300905-26300924
ACCGATTGTATTGACTACGGTTGTTGTAGT26300905TCCTCTGAAAATTACCTCGAATATTGTTATTATAAGAATTCTAAGAAGCA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:26408157-26408176
TACGGTTGTTGTAGTTCTTCTAAGAGTTGT26408157TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAAAATTCTGAGAAGCA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:26360474-26360493
ACCGATTGTATTGACTACGGTTGTTGTAGT26360474TCCTCTGAAAATTACCTCGAATATTGTTATTATAAGAATTCTAAGAAGCA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:27251641-27251660
TACGGTTGTTGTAGTTCCTCTGAGAGTTGT27251641TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:26186001-26186020
TACGGTTGTTGTAGTTCCTCTGAGAGTTGT26186001TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:24914677-24914696
TATGGTTGTTGTAGTTCCCCTGAGAGTTGT24914677TCCTCTGAAAATTACCTCGATTATTGTTATTGTAAGAATTCTGAGAAGCA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21043312-21043331
TACGGTTGTTGTAGCTCCTTTGAGAGTTGT21043312TCCTCTGAAAATTACCTCGATCATTGCTGTTGTAAAAATTCTGAGATGCA
Trididemnum nubilum genome assembly, chromosome: 11.
OZ014479.1:10458953-10458972
GTATGCCAACGACTATTTGATTAGAAAATA10458953TCCTCTGAAAATTACCTCGACTGGAAAAACACCAGCTCAATCTTAAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGAGGTAATTTTCAGAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGAGGTAATTTTCAGAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=TCGAGGTAATTTTCAGAGGA&k=0&no_gap=0&offset=0&limit=50
0.122 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTCTGAAAATTACCTCGA&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.011 | cgi_end;

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