GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-30 18:41:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Porites australiensis mRNA, contig: Pau-assembly_38927.
FX474158.1:1340-1359
GTTGGTTGTTTGAGTTTCTCCCATTCAAGT1340TCGCAGAATTCGGAGAACTTGAATTGTTTTTAACTCCTTGTCTTTCCATG
Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
AP015034.1:48108507-48108526
GTGTAAGGTGGGGTGGTAGTATAAAAAGGG48108507TCGCAGAATTCGGAGAACTTTTCCATTTGCATCATCATTGCCATCACGTC
UCRVU07_CCNP11437_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP11437.b1, mRNA sequence.
FG876703.1:295-314
GACGTGATGGCAATGATGATGCAGATGGAA295AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
UCRVU08_CCNS15510_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15510.b1, mRNA sequence.
FG898660.1:291-310
GACGTCATGGCAATGATGATGCAGATGGAA291AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Vigna angularis mRNA, clone: VES09H11.
HX945657.1:247-266
GACGTGATGGCAATGATGATGCAAATGGAA247AAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACAC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:25956694-25956713
GACGTCATGGCAATGATGATGCAGATGGAA25956694AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:25957879-25957898
GACGTCATGGCAATGATGATGCAGATGGAA25957879AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Porites lutea genome assembly, chromosome: 4.
OY283127.1:31518731-31518750
CATGGAGAGGCAAGGAGTTAAAAACAATTC31518731AAGTTCTCCGAATTCTGCGAACTTGAATGGGAGAAACTCAAACAACCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGCAGAATTCGGAGAACTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCAGAATTCGGAGAACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TCGCAGAATTCGGAGAACTT&k=0&no_gap=0&offset=0&limit=50
0.349 | 0.239 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTTCTCCGAATTCTGCGA&k=0&no_gap=0&offset=0&limit=48
0.353 | 0.004 | cgi_end;

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