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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:56:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Populus nigra mRNA, clone: PnFL2-019_A24, 5'end.
DB877930.1:430-448
TCTCCGCTCCATTCCTCGTTCTTTCCATCA430TCGCCTCCACCACTTCCCGGCTCCCGTCACTGCCCACCACCACCTCACT
Trifolium repens mRNA, clone: WCC41h22_060, unspecified EST.
FY468633.1:112-130
ACCTCCTCTCAAAGTCTCTCCGTCCCGCCG112TCGCCTCCACCACTTCCCGCTCCTTCAACACCAACGCCATGCGCCAGTA
Paspalum notatum var. saurae isolate R1 chromosome 02.
CP144746.1:5655158-5655176
GCACCAACTCGCCGCCGCCGCTGCCATACT5655158TCGCCTCCACCACTTCCCGTTGATCCGCCGCCACAAACTCGCCTCCACC
Avena insularis genome assembly, chromosome: 2C.
OU342339.1:464310935-464310953
GGTGAAGACACCCCATCACCTTGGTCACGA464310935TCGCCTCCACCACTTCCCGGGAAGCTTGGAGGCTTTGACTGAGGCTCGG
Avena insularis genome assembly, chromosome: 4D.
OU342348.1:127315799-127315817
CCCTCCCCGAGCTCGCCATCGACCACCACC127315799TCGCCTCCACCACTTCCCGGCAGCTGGCGAGCCCTCAGGTAAGCTTCCC
Avena insularis genome assembly, chromosome: 4D.
OU342348.1:127333905-127333923
CCCTCCCCGAGCTCGTTGTCGACCACCGCC127333905TCGCCTCCACCACTTCCCGGTAGCTGGAGAGCCCTCAGGTAAGCTTCCC
Avena sativa genome assembly, chromosome: 4A.
OU342381.1:100448209-100448227
CCATCCCCGAGCTCGCCATCGACCACCACC100448209TCGCCTCCACCACTTCCCGGCAGCTGGCGAGCCCTTAGGTAAGCTTCCC
Avena sativa genome assembly, chromosome: 2C.
OU342386.1:487578658-487578676
GGTGAAGACACCCCATCACCTTGGTCACGA487578658TCGCCTCCACCACTTCCCGGGAAGCTTGGAGGCTTTGACTGAGGCTCGG
Avena sativa genome assembly, chromosome: 4.
OV702282.1:91187044-91187062
CCATCCCCGAGCTCGCCATCGACCACCACC91187044TCGCCTCCACCACTTCCCGGCAGCTGGCGAGCCCTTAGGTAAGCTTCCC
Avena sativa genome assembly, chromosome: 9.
OV702287.1:525347770-525347788
GGTGAAGACACCCCATCACCTTGGTCACGA525347770TCGCCTCCACCACTTCCCGGGAAGCTTGGAGGCTTTGACTGAGGCTCGG
Populus nigra genome assembly, chromosome: 18.
OX637689.1:13012502-13012520
TCTCCGCTCCATTCCTCGTTCTTTCCATCA13012502TCGCCTCCACCACTTCCCGGCTCCCGTCACTGCCCACCACCACCTCACT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:58376581-58376599
CCAACCTCCTCTCAAAATCTCTCCGTCCCG58376581TCGCCTCCACCACTTCCCGCTCATTCAACACCAACGCCATGCGCCAGTA
Rosa rugosa genome assembly, chromosome: 3.
OY288193.1:41305815-41305833
CACCCATAGCAGCCTGCTTGTTGATCGATT41305815TCGCCTCCACCACTTCCCGGCTAGGAGCGGCTGCACACCGATCAGAGTA
Pseudomonas furukawaii DNA, complete genome.
AP014862.1:4885242-4885260
CACCACTGCGCCGCCGAGCGCCGCGAACCA4885242TCGCCTCCACCACTTCCCGACTGACCGCCCCCACCTGTGGAAAAAGTTC
Sphingomonas sanxanigenens NX02, complete genome.
CP006644.1:5027043-5027061
TCAACCGCTATCGCACGCGACCCGCGCGCA5027043TCGCCTCCACCACTTCCCGCGACATCCGCATCACCGGCAGCTTCTCGCT
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence.
CP010536.1:104648-104666
ACTCGCACGCGACCCGACCCGCCGCCTCCT104648TCGCCTCCACCACTTCCCGCGCTTCCCGATTCTGTGAACTGGCCGACAC
Streptomyces formicae strain KY5 chromosome, complete genome.
CP022685.1:3093481-3093499
GGGCATGGAAGGCATAGCCGGAACGGATGG3093481TCGCCTCCACCACTTCCCGTGGGTACTGGCGCCGCAGCAACCGATCGTT
Pseudomonas furukawaii strain ZS1 chromosome.
CP086379.1:4742500-4742518
CACCACTGCGCCGCCGAGCGCCGCGAACCA4742500TCGCCTCCACCACTTCCCGACTGACCGCCCCCACCTGTGGAAAAAGTTC
Streptomyces sp. NBC_01013 chromosome, complete genome.
CP108687.1:5937884-5937902
GGGTATGGAAGGCGTAGCCGGAACGGATGG5937884TCGCCTCCACCACTTCCCGTGGGTAGAGCCGCCGCAGCAACCGGTCGTT
Habrosyne pyritoides genome assembly, chromosome: 9.
OU015594.1:9522797-9522815
TGTGTTAAACAAATGCCTTTGATAGAATCC9522797TCGCCTCCACCACTTCCCGCAAATCCTCCTCCCTCTTCAGTGGCATCCT
Erebia ligea genome assembly, chromosome: 8.
OU785227.1:7709148-7709166
TGTGTTGAAAAATCTCCTTTAATAGAGCCT7709148TCGCCTCCACCACTTCCCGCAAATCCTCCTCCTTCGTCGGTGGCTTCTT
Erebia aethiops genome assembly, chromosome: 14.
OV281093.1:6797865-6797883
TGTGTTGAAAAATCTCCTTTAATAGAGCCT6797865TCGCCTCCACCACTTCCCGCAAATCCTCCTCCCTCGTCAGTGGCTTCTT
Incurvaria masculella genome assembly, chromosome: 1.
OX335641.1:28005495-28005513
CGGACGGTCTAATCTCCAAACACAGGCTTC28005495TCGCCTCCACCACTTCCCGCAGCCTCGCTTGTGTGCGGGCCGAAGCGCT
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: V.
OX377204.1:32388496-32388514
AGTCATTGTATGGCCAAATACGCATTCATG32388496TCGCCTCCACCACTTCCCGTAGAAGTAGAATGCGCTGGCGCATCCCAGA
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: I.
OX377205.1:85043533-85043551
GCCCACCGTATGGTCAAATACGCATTCAAA85043533TCGCCTCCACCACTTCCCGTAGAATGAGAGTGCGTGGCGCATCCCAAAA
Achlya flavicornis genome assembly, chromosome: 8.
OX392475.1:11508980-11508998
TGTGTTGAACAAATGCCTTTGATAGAACCC11508980TCGCCTCCACCACTTCCCGCAAATCCTCCTCCCTCTTCAGTGGCTTCCT
Heliothis peltigera genome assembly, chromosome: 8.
OY292329.1:8243870-8243888
TGTGTTGAACAAATGCCTTTGATAGAATCC8243870TCGCCTCCACCACTTCCCGCGAATCCCCCACCTTCTTCTGTGGCATCCT
Tethea ocularis genome assembly, chromosome: 8.
OY741964.1:8285319-8285337
TGTGTTCAACAAATGCCTTTGATAGAACCC8285319TCGCCTCCACCACTTCCCGCAAATCCTCCTCCCTCTTCAGTGGCATCCT
1095403233091 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005533641 3', genomic survey sequence.
EJ312276.1:604-622
CTGGATTTTCAGGCGACCACCCCTTGCGCC604CGGGAAGTGGTGGAGGCGATGGCGCCGTACTGGAGTGAAGCCTGGGGCA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:7545137-7545155
TACTGGCGCATGGCGTTGGTGTTGAAGGAG7545137CGGGAAGTGGTGGAGGCGACGGGACGGAGAGACTTTGAGAGGAGGTTGG
Secale cereale genome assembly, chromosome: 5R.
LR738713.1:852066489-852066507
ACGATGCTTCGACCGCCGGTCTTTGCGCCA852066489CGGGAAGTGGTGGAGGCGACGCTGGCATGGGAGGAGCCACCGCCGCCGT
Avena sativa genome assembly, chromosome: 4D.
OU342395.1:88398070-88398088
GGGAAGCTTACCTGAGGGCTCTCCAGCTAC88398070CGGGAAGTGGTGGAGGCGAGGCGGTGGTCGACAACGAGCTCGGGGAGGG
Avena sativa genome assembly, chromosome: 4D.
OU342395.1:88418109-88418127
GGGAAGCTTACCTGAGGGCTCGCCAGCTGC88418109CGGGAAGTGGTGGAGGCGAGGTGGTGGTCGATGGCGAGCTCAGGGAGGG
Avena sativa genome assembly, chromosome: 18.
OV702296.1:120179500-120179518
GGGAAGCTTACCTGAGGGCTCTCCAGCTAC120179500CGGGAAGTGGTGGAGGCGAGGCGGTGGTCGACAACGAGCTCGGGGAGGG
Avena sativa genome assembly, chromosome: 18.
OV702296.1:120197597-120197615
GGGAAGCTTACCTGAGGGCTCGCCAGCTGC120197597CGGGAAGTGGTGGAGGCGAGGTGGTGGTCGATGGCGAGCTCAGGGAGGG
Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome.
CP023699.1:6807711-6807729
AACGATCGGTTGCTGCGGCGGCTCTACCCA6807711CGGGAAGTGGTGGAGGCGACCATCCGTTCCGGCTATGCCTTCCACACCC
Streptomyces viridosporus T7A strain ATCC 39115 chromosome, complete genome.
CP023700.1:920706-920724
AACGACCGGCTGCTGCTGCGGCTTTACCCC920706CGGGAAGTGGTGGAGGCGACCATCCGGTCCGGCTACGCCTTCCATACCC
Roseovarius sp. SCSIO 43702 chromosome, complete genome.
CP080623.1:3550666-3550684
CTTTTCCGATGGTCCGGGGGATGTGATTTT3550666CGGGAAGTGGTGGAGGCGAGTACCGGAATCGAACCGGTGTACACGGATT
Streptomyces sp. Caat 7-52 chromosome, complete genome.
CP098485.1:617210-617228
AACGACCGATTTCTGCGGCGGCTCTACCCA617210CGGGAAGTGGTGGAGGCGACCATCCGGTCCGGCTACGCCTTCCACACCC
Streptomyces sp. NBC_01235 chromosome, complete genome.
CP108513.1:9782370-9782388
AACGACCGGTTGCTGCTGCGGCTCTACCCA9782370CGGGAAGTGGTGGAGGCGACCATTCGCTCCGGCTACGCCTTCCATACCC
Heligmosomoides bakeri genome assembly, chromosome: X.
OX375870.1:83700841-83700859
TTTTGGGATGCGCCACGCATTCTACTTCTA83700841CGGGAAGTGGTGGAGGCGAGTTGAATGTGTATTTGGCAATACAATGACT
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: I.
OX377205.1:17383421-17383439
CTTTGGGATACGCCACGCATTCTACTTCTA17383421CGGGAAGTGGTGGAGGCGAGTTGAATGCGTATTTGGCCATACAATGACT
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: X.
OX377206.1:8059801-8059819
TATTGGGATGCGCCACGCATTCTTCTTCTA8059801CGGGAAGTGGTGGAGGCGATTTGAATGCATATTTAGCCACACAATGACC
Tetheella fluctuosa genome assembly, chromosome: 7.
OX578221.1:4326421-4326439
AGGATGCCACTGAAGAGGGAGGAGGATTAG4326421CGGGAAGTGGTGGAGGCGAGGGTTCTATCAAAGGCATTTGTTCAACACA
Polyploca ridens genome assembly, chromosome: 8.
OX596251.1:5557386-5557404
AGGATGCCACTGAAGAGGGAGGAGGATTTG5557386CGGGAAGTGGTGGAGGCGAGGGTTCTATCAAAGGCATTTGTTCAACACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGCCTCCACCACTTCCCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCCTCCACCACTTCCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.379 | 0.371 | search_plus_done; http://172.18.8.135:50400/match?q=TCGCCTCCACCACTTCCCG&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.146 | search_minus_done; http://172.18.8.135:50400/match?q=CGGGAAGTGGTGGAGGCGA&k=0&no_gap=0&offset=0&limit=22
0.536 | 0.011 | cgi_end;

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