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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:52:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Argyrosomus regius genome assembly, chromosome: 20.
OX336901.1:13097023-13097042
ACAGACAAGAGAAGAAAAAATCATGATTAC13097023TCGCCTCTAAAGCTAAGGAACACCTTGTTTATAGAAGACAAATACACTGT
TSA: Lens culinaris contig04172.Lecu mRNA sequence.
JI850440.1:808-827
AGGTGGCTAGTGAAGGTGTAGCGTGTGTCC808TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGTATTGGA
TSA: Pisum sativum Ps_contig_mira-ass_51122 mRNA sequence.
JI944815.1:304-323
AGGTGGCTAGTGAAGGTGTAGCGTGTGTCC304TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGCATTGGA
TSA: Pisum sativum contig01018.PisaPYK9 mRNA sequence.
JR951750.1:843-862
AGGTGGCTAGTGAAGGTGTAGCGTGTGTCC843TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGCATTGGA
TSA: Vicia faba contig00983.VifaIA mRNA sequence.
JR965153.1:770-789
AGGTGGCTAGTGAAGGTGTAGCGTGTGTCC770TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGTATTGGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296370_c0_seq7.
LA678825.1:51-70
AAATGACCAGTAAAGCCTCTGCGAGTATCC51TCGCCTCTAAAGCTAAGGAACACATCAAATTTCCTCATAGGAGGAGCTGA
Medicago truncatula clone BAC MtQRRS1_F83005.5, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
JX457607.1:44439-44458
AGATGGCTAGTGAAGGTGTAGCGTGTGTCC44439TCGCCTCTAAAGCTAAGGAACACTTCATGTTTTTGTTGAGGAGTATTGGA
Medicago truncatula clone mth2-21j3, complete sequence.
AC134049.24:116915-116934
AGATGGCTAGTGAAGGTGTAGCGTGTGTCC116915TCGCCTCTAAAGCTAAGGAACACTTCATGTTTTTGTTGAGGAGTATTGGA
Glycine max strain Williams 82 clone GM_WBa0029B22, complete sequence.
AC235119.1:162367-162386
AGATGGCTTGTGAAAGTGTAACGTGTGTCC162367TCGCCTCTAAAGCTAAGGAAAACGTCGTGCACTTGTTGAGGGGTCTTGGA
Glycine max strain Williams 82 clone GM_WBb0029M05, complete sequence.
AC235240.1:66642-66661
AGATGGCTTGTGAAAGTGTAACGTGTGTCC66642TCGCCTCTAAAGCTAAGGAAAACGTCGTGCACTTGTTGAGGGGTCTTGGA
Daucus carota subsp. sativus cultivar DH1 chromosome 9.
CP093351.1:5781267-5781286
AGGTGGTCAGTGAAGGTTTTCCGTGTATCT5781267TCGCCTCTAAAGCTAAGGAAAACATCATAACAGTAGTTTTGAGATGATGA
Daucus carota isolate Kuroda chromosome 9.
CP125309.1:5700368-5700387
AGGTGGTCAGTGAAGGTTTTACGCGTATCT5700368TCGCCTCTAAAGCTAAGGAAAACATCATAACAGTAGTTTTGAGATGATGA
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:29699636-29699655
AGATGGCTAGTGAAGGTGTAGCGTGTGTCC29699636TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGTAGAGGA
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:774324199-774324218
AGGTGGCTAGTGAAGGTGTAGCGTGTGTCC774324199TCGCCTCTAAAGCTAAGGAACACTTCATGCTTTTGTTGAGGAGTATTGGA
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:27940358-27940377
AGATGGCTAGTGAAAGTGTAGCGTGTGTCC27940358TCGCCTCTAAAGCTAAGGAATACTTCATGCTTTTGTTGTGGAGTAGGGGA
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:5526184-5526203
AGATTGCCGGTGAAACCATGACGAGTATCC5526184TCGCCTCTAAAGCTAAGGAACACGTCGTACAAAAACTTATGAGCAACAGA
Inga oerstediana genome assembly, chromosome: 2.
OY723400.1:85857301-85857320
AGATGACTTGCAAAATTGTTGCGGGTATCA85857301TCGCCTCTAAAGCTAAGGAACACATCATACTTGGTTGTAGGAGGAGAAAC
san05e07.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-2918 5' similar to TR:Q9ZS31 Q9ZS31 NL27, mRNA sequence.
BQ080089.1:46-65
TCCAAGACCCCTCAACAAGTGCACGACGTT46TTCCTTAGCTTTAGAGGCGAGGACACACGTTACACTTTCACAAGCCATCT
META624TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY474510.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
METB801TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY477899.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
METBH57TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY478730.1:81-100
TCCAATACTCCTCAACAAAAACATGAAGTG81TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
METBI43TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY478807.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
GLQA287TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
FK009246.1:30-49
GCAAGACCCCTCAACAAGTGCACGACGTT30TTCCTTAGCTTTAGAGGCGAGGACACACGTTACACTTTCACAAGCCATCT
MEUA341TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE343628.1:197-216
TCCAATACTCCTCAACAAAAACATGAAGTG197TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
MEUB023TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE346813.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
MEUB445TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE347191.1:108-127
TCCAATACTCCTCAACAAAAACATGAAGTG108TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
METC381TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT137903.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
METCZ17TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT140669.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
TSA: Cannabis sativa PK00067.1_1.CasaPuKu mRNA sequence.
JP449956.1:175-194
TCAGCTGCTCCTATGAGGAAATTTGATGTG175TTCCTTAGCTTTAGAGGCGAGGATACTCGCAGAGGCTTTACTGGTCACTT
GS_ABa072B19.R GS_ABa Glycine stenophita genomic 3', genomic survey sequence.
JS161733.1:175-194
TCCAAAACCCCTCAACAAGTGCACGACGTT175TTCCTTAGCTTTAGAGGCGAGGACACACGTTACACTTTCACAAGCCATCT
Glycine max clone cw3 TIR-NBS-LRR type disease resistance protein mRNA, complete cds.
FJ014864.1:64-83
TCCAAGACCCCTCAACAAGTGCACGACGTT64TTCCTTAGCTTTAGAGGCGAGGACACACGTTACACTTTCACAAGCCATCT
Medicago truncatula clone JCVI-FLMt-1A16 unknown mRNA.
BT136923.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
Medicago truncatula clone JCVI-FLMt-13D4 unknown mRNA.
BT144189.1:107-126
TCCAATACTCCTCAACAAAAACATGAAGTG107TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
Glycine max cultivar Williams 82 chromosome 18.
CP126443.1:17416519-17416538
TCCAAGACCCCTCAACAAGTGCACGACGTT17416519TTCCTTAGCTTTAGAGGCGAGGACACACGTTACACTTTCACAAGCCATCT
Medicago truncatula chromosome 5 clone mte1-73d17, COMPLETE SEQUENCE.
CR954189.3:90649-90668
TCCAATACTCCTCAACAAAAACATGAAGTG90649TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
Trifolium subterraneum genome assembly, chromosome: 7.
OX637467.1:19082456-19082475
ATAAAAATGGCACAACAAAAACATGAAGTG19082456TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACTTTCACTAGCCATCT
Trifolium dubium genome assembly, chromosome: 6.
OX638067.1:35567351-35567370
TCCTCTACTCCTCAACAAAAGCATGAAGTG35567351TTCCTTAGCTTTAGAGGCGAGGACACCCGCTACACCTTCACTAGCCATCT
Trifolium dubium genome assembly, chromosome: 6.
OX638067.1:35638715-35638734
TCCTCAACTCCACAACAAAAGCATGAAGTG35638715TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACTTTCACTAGCCATCT
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:42155314-42155333
TCCTCTACTCCTCAACAAAAGCATGAAGTG42155314TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCATCT
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:30347809-30347828
TCAGCTCCTCCTATGAGGAAATTTGATGTG30347809TTCCTTAGCTTTAGAGGCGAGGATACTCGCAGAGGCTTTACTGGTCATTT
Inga laurina genome assembly, chromosome: 1.
OY979701.1:6397912-6397931
GTTTCTCCTCCTACAACCAAGTATGATGTG6397912TTCCTTAGCTTTAGAGGCGATGATACCCGGAACAATTTTGCAAGTCATCT
Lathyrus sativus genome assembly, chromosome: 2.
OZ012736.1:29888121-29888140
TCCAATACTCCTCAACAAAAGCATGAAGTG29888121TTCCTTAGCTTTAGAGGCGAGGACACACGCTACACCTTCACTAGCCACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGCCTCTAAAGCTAAGGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCCTCTAAAGCTAAGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.155 | 0.147 | search_plus_done; http://172.18.8.135:50400/match?q=TCGCCTCTAAAGCTAAGGAA&k=0&no_gap=0&offset=0&limit=50
1.050 | 0.895 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCTTAGCTTTAGAGGCGA&k=0&no_gap=0&offset=0&limit=33
1.066 | 0.016 | cgi_end;

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