GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-17 15:39:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GM880016A20H09 Gm-r1088 Glycine max cDNA clone Gm-r1088-6114 3', mRNA sequence.
BU549272.1:344-363
GGGACTCTTAGGAAGCAGAGCGGCATTGAG344TCGCGTTACTCTGAGCTTGAAATCAAACTGCGTAGTGGAGAAGCCTCTAG
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:1423129-1423148
GGGACTCTTAGGAAGCAGAGCGGCATTGAG1423129TCGCGTTACTCTGAGCTTGAAATCAAACTGCGTAGTGGAGAAGCCTCTAG
Sequence 4487 from patent US 9029636.
HK913550.1:44-63
CTAGAGGCTTCTCCACTACGCAGTTTGATT44TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCTAAGAGTCCC
su69e11.y1 Gm-c1069 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1069-2158 5' similar to TR:Q9SHN5 Q9SHN5 F7F22.5, mRNA sequence.
BF596152.1:143-162
CTAGAGGCTTCTCCACTACGCAGTTTGATT143TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCTAAGATTCCC
sae89h03.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-3413 5', mRNA sequence.
BG882490.1:277-296
CTAGAGGCTTCTCCACTACGCAGTTTGATT277TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCTAAGAGTCCC
JGI_ACBU5325.fwd ACBU Phakopsora pachyrhizi infected soybean leaf tissue 6-8 days post inoculation with TW72-1 urediniospores Glycine max cDNA clone ACBU5325 5', mRNA sequence.
EH261772.1:251-270
CTAGAGGCTTCTCCACTACGCAGTTTGATT251TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCTAAGAGTCCC
GLMBM60TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
EV272660.1:301-320
CTAGAGGTTTCTCCACTACGCAGTTTGATT301TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCCAAGAGTCCC
Trifolium repens mRNA, clone: WCC42h03_044, unspecified EST.
FY468972.1:332-351
CTAGAGGCTTCTCAACAACTCAATTCGATT332TCAAGCTCAGAGTAACGCGACTCAATGTTGTTCAATTACCTAACAATTAC
Trifolium repens mRNA, clone: WCT3_28, unspecified EST.
FY469674.1:336-355
CTAGAGGCTTCTCAACAACTCAATTCGATT336TCAAGCTCAGAGTAACGCGACTCAATGTTGTTCAATTACCTAACAATTAC
GF_Ba040N11.R GF_Ba Glycine falcata genomic 3', genomic survey sequence.
HR069347.1:767-786
CTAGAGGCTTCTCCACCAGGCAGTTTGATT767TCAAGCTCAGAGTAACGCGACTCAATGCCGCTCTGCTTCCTAAGAATCAC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:57518240-57518259
CTAGAGGCTTCTCAACAACTCAATTCGATT57518240TCAAGCTCAGAGTAACGCGACTCAATGTTGCTCTATTACCTAACAATTAC
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:59847081-59847100
CTAGAGGCTTCTCAACAACTCAATTCGATT59847081TCAAGCTCAGAGTAACGCGACTCAATGTTGTTCAATTACCTAACAATTAC
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:54189339-54189358
CTAGAGGCTTCTCAACAACTCAATTCGATT54189339TCAAGCTCAGAGTAACGCGACTCAATGTTGCTCTATTACCTAACAACTAC
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:57410836-57410855
CTAGAGGCTTCTCAACAACTCAATTCGATT57410836TCAAGCTCAGAGTAACGCGACTCAATGTTGCTCTATTACCTAACAATTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGCGTTACTCTGAGCTTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCGTTACTCTGAGCTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=TCGCGTTACTCTGAGCTTGA&k=0&no_gap=0&offset=0&limit=50
0.519 | 0.389 | search_minus_done; http://172.18.8.135:50400/match?q=TCAAGCTCAGAGTAACGCGA&k=0&no_gap=0&offset=0&limit=48
0.528 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).