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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:41:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

KS08017A11 KS08 Capsicum annuum cDNA, mRNA sequence.
BM068108.1:479-498
TGAGCAGATGAGTTTTTCTAGTTTGGGTTT479TCGCTTTCATAGCGTGTTTGATGTTTACTCAAAAGTTCCATATATATATA
TSA: Capsicum annuum MA_MegaContig_14058, mRNA sequence.
JW157784.1:4749-4768
TGAGCAGATGAGTTTTTCTAGTTTGGGTTT4749TCGCTTTCATAGCGTGTTTGATGTTTACTCAAAAGTTCCATATATATATA
Azorinus chamasolen genome assembly, chromosome: 2.
OY755236.1:100422836-100422855
CATTTTATATTCATGTCTAGTTCTGCCCGT100422836TCGCTTTCATAGCGTGTTTGTTTGTCTTTGTGGATGGTGAATCCTTTTGT
TSA: Capsicum annuum MGMT_Contig19463, mRNA sequence.
JW069707.1:229-248
TATATATATATGGAACTTTTGAGTAAACAT229CAAACACGCTATGAAAGCGAAAACCCAAACTAGAAAAACTCATCTGCTCA
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:266298683-266298702
TATATATATATGGAACTTTTGAGTAAACAT266298683CAAACACGCTATGAAAGCGAAAACCCAAACTAGAAAAACTCATCTGCTCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:269887869-269887888
TATATATATATGGAACTTTTGAGTAAACAT269887869CAAACACGCTATGAAAGCGAAAACCCAAACTAGAAAAACTCATCTGCTCA
Cepaea hortensis genome assembly, chromosome: 10.
OY992885.1:48851853-48851872
CTATCCAGGAGGCACAGTCAGGACGCCACG48851853CAAACACGCTATGAAAGCGAACTAAAGAAGAAGAAAACCAGACACCATGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGCTTTCATAGCGTGTTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCTTTCATAGCGTGTTTG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.189 | 0.181 | search_plus_done; http://172.18.8.135:50400/match?q=TCGCTTTCATAGCGTGTTTG&k=0&no_gap=0&offset=0&limit=50
0.301 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACACGCTATGAAAGCGA&k=0&no_gap=0&offset=0&limit=47
0.304 | 0.003 | cgi_end;

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