GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 02:38:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 95374 from Patent WO2008034648.
FB876101.1:106-125
CATGCTTTCCCTGTCTCTGCCAACACTTTT106TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
Sequence 95374 from Patent EP2090662.
HB746160.1:106-125
CATGCTTTCCCTGTCTCTGCCAACACTTTT106TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
Linum usitatissimum chromosome Lu1.
CP027619.1:6383341-6383360
TCGACAGCAATCCGGGGATAACCCAGTGTC6383341TCGGCTACAGAATCTCTCACGACCAACCGGGCGGTAGGTGTACTTACGAT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:47799827-47799846
CATGCTTTCCCTGTCTCTGCCAACACTTTT47799827TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:46690639-46690658
CCAGCCTTGGGTGTCTCTGCCAGCACACTG46690639TCGGCTACAGAATCTCTCACTATCTCAGGCAACAAAACCATCATATGTCG
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:4835848-4835867
CATGCTTTCTCTGTCTCTGCCAACACTTTT4835848TCGGCTACAGAATCTCTCACTGTCTCAAGCAACAAAACCATTCTATCTCG
Brassica napus genome assembly, chromosome: A04.
HG994358.1:4823131-4823150
CATGCTTTCTCTGTCTCTGCCAACACTTTT4823131TCGGCTACAGAATCTCTCACTGTCTCAAGCAACAAAACCATTCTATCTCG
Brassica napus genome assembly, chromosome: C04.
HG994368.1:41503256-41503275
CATGCTTTCCCTGTCTCTGCCAACACTTTT41503256TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
Brassica napus genome assembly, chromosome: C06.
HG994370.1:40689173-40689192
CCAGCCTTGGGTGTCTCTGCCAGCACACTG40689173TCGGCTACAGAATCTCTCACTATCTCAGGCAACAAAACCATCATATGTCG
Brassica rapa genome, scaffold: A04.
LR031576.1:4809515-4809534
CATGCTTTCTCTGTCTCTGCCAACTCTTTT4809515TCGGCTACAGAATCTCTCACCATCTCAAGCAACAAAACCATTCTATCTCG
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:40695218-40695237
CATGCTTTCCCTGTCTCTGCCAACACTTTT40695218TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:37315439-37315458
CCAGCCTTGGGTGTCTCTGCCAGCACACTG37315439TCGGCTACAGAATCTCTCACTATCTCAGGCAACAAAACCATCATATGTCG
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:4901397-4901416
CATGCTTTCTCTGTCTCTGCCAACTCTTTT4901397TCGGCTACAGAATCTCTCACCATCTCAAGCAACAAAACCATTCTATCTCG
Thlaspi arvense genome assembly, chromosome: 5.
OU466861.1:41161102-41161121
CCCGCTTTCTGTAACTCTGCCAACACTCTG41161102TCGGCTACAGAATCTCTCACTATCTCAAGCAAGAGAACCATTATATCTCC
Brassica oleracea mRNA for SFR1 protein.
Y14285.1:113-132
CATGCTTTCCCTGTCTCTGCCAACACTTTT113TCGGCTACAGAATCTCTCACTATCTCAAGCAACAAAACCATTCTATCTCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_61752.
FX749610.1:545-564
CGAGATAGAATGGTTTTGTTGCTTGAGACA545GTGAGAGATTCTGTAGCCGAAAAAGTGTTGGCAGAGACAGAGAAAGCATG
SIR-4C12TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-4C12, genomic survey sequence.
FI783587.1:491-510
GAAGACTGAATGGTTTTGTTGCTTGAGGCA491GTGAGAGATTCTGTAGCCGACAAAGTGGTTGAAGAGATAGACAAAGCAGG
SIR-11P1TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-11P1, genomic survey sequence.
FI787876.1:362-381
GAAGATAGAATGGTTTTGTTGCTTGAGATA362GTGAGAGATTCTGTAGCCGACAAAGTGTTTGAAGAGATAGATAAAGCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGGCTACAGAATCTCTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGGCTACAGAATCTCTCAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.145 | 0.137 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGCTACAGAATCTCTCAC&k=0&no_gap=0&offset=0&limit=50
0.234 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGAGATTCTGTAGCCGA&k=0&no_gap=0&offset=0&limit=35
0.236 | 0.002 | cgi_end;

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