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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:23:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Schima mertensiana mRNA, contig: Sm_rep_c3315.
FX148892.1:460-479
TCAGCAACCCCAACAAAAAGAGCTTCTGTG460TCGGGGCTGAAGGAAATTCCAGCAATCTCACCAAACAGATCGATCTCCTG
TSA: Ipomoea batatas Contig_8419.Ipbalsr mRNA sequence.
JP113007.1:208-227
TCTGCAACTCCGATGAACAGAGCTTCAGTG208TCGGGGCTGAAGGAAATTCCGGCAATCTCGCCGAACAGATCAATCTCCTG
TSA: Camellia sinensis tea_rep_c1139 mRNA sequence.
KA280580.1:355-374
TCTGCAATGCCAACAAAAAGGGCTTCTGTG355TCGGGGCTGAAGGAAATTCCAGCAATCTCTCCAAACAGATCGATCTCTTG
IGS-SCF-0106-L100438-0106-012-I12q-T7 IGS-SCF-0106 Bvu-KWS2320 BAC library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-0106-L100438-0106-012-I12q, genomic survey sequence.
HN131474.1:194-213
TCAGCAACCCCAACAAACAATGCTTCAGTG194TCGGGGCTGAAGGAAATTCCGGCAATCTCTCCAAACAAATCAATTTCTTG
Fraxinus pennsylvanica genome assembly, chromosome: 15.
OU503050.1:29004095-29004114
TCTGCAACTCCAACAAACAGTGCTTCACTA29004095TCGGGGCTGAAGGAAATTCCGGCTATCTCCCCAAACAGATCGATCTCTTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:18409817-18409836
TCAGCAACCCCAACAAACAATGCTTCAGTG18409817TCGGGGCTGAAGGAAATTCCGGCAATCTCTCCAAACAAATCAATTTCTTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:18283325-18283344
TCAGCAACCCCAACAAACAATGCTTCAGTG18283325TCGGGGCTGAAGGAAATTCCGGCAATCTCTCCAAACAAATCAATTTCTTG
Platycnemis pennipes genome assembly, chromosome: 11.
OW121857.1:87606828-87606847
AAGAGATTAATTCTTAAACAGTGCATACGT87606828TCGGGGCTGAAGGAAATTCCGGTGGTTTGAAATACCCAATGAAATTCGAC
E012279-024-007-A08-SP6 MPIZ-ADIS-024-inflorescence Beta vulgaris cDNA clone 024-007-A08 5-PRIME, mRNA sequence.
BQ582619.1:393-412
CAAGAAATTGATTTGTTTGGAGAGATTGCC393GGAATTTCCTTCAGCCCCGACACTGAAGCATTGTTTGTTGGGGTTGCTGA
021011KAIA009375HT (KAIA) Actinidia chinensis ripe fruit Actinidia chinensis cDNA clone KAIAA00937, mRNA sequence.
FG460140.1:394-413
CAGGAGATCGATCTGTTCGGGGAAATTGCT394GGAATTTCCTTCAGCCCCGACACGGAAGCTCTTTTCATTGGGGTTGCGGA
011204KAKA003926HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment Actinidia deliciosa cDNA clone KAKAA00392, mRNA sequence.
FG467586.1:453-472
CAGGAGATCGATCTGTTCGGGGAAATTGCT453GGAATTTCCTTCAGCCCCGACACGGAAGCTCTTTTCATTGGGGTTGCGGA
020217KALA006314HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatment Actinidia deliciosa cDNA clone KALAA00631, mRNA sequence.
FG475405.1:205-224
CAGGAGATCGATCTGTTCGGGGAAATTGCT205GGAATTTCCTTCAGCCCCGACACGGAAGCTCTTTTCATTGGGGTTGCGGA
011122KAJA001552HT (KAJA) Actinidia eriantha ripe fruit skin Actinidia eriantha cDNA clone KAJAA00155, mRNA sequence.
FG480145.1:468-487
CAGGAGATCGATCTGTTCGGGGAAATTGCG468GGAATTTCCTTCAGCCCCGACACGGAAGCTCTTTTCATTGGGGTTGCGGA
EB_T3_056_D06_01MAR2005_042.1 EB (AAFC-CIP) Ipomoea batatas cDNA clone EB_T3_056_D06_01MAR2005_042, mRNA sequence.
JG699432.1:118-137
CAGGAGATTGATCTGTTCGGCGAGATTGCC118GGAATTTCCTTCAGCCCCGACACTGAAGCTCTGTTCATCGGAGTTGCTGA
TSA: Schima mertensiana mRNA, contig: Sm_rep_c13780.
FX159357.1:501-520
AGGGATACGGATCTGTTTGGTGAGATTGCT501GGAATTTCCTTCAGCCCCGACACAGAAGCTCTTTTTGTTGGGGTTGCTGA
Ipomoea trifida cultivar NCNSP0306 chromosome 5.
CP025648.1:16248745-16248764
CAGGAGATTGATCTGTTCGGCGAGATTGCC16248745GGAATTTCCTTCAGCCCCGACACTGAAGCTCTGTTCATCGGAGTTGCAGA
Ipomoea triloba cultivar NCNSP0323 chromosome 5.
CP025664.1:20470494-20470513
CAGGAGATTGATCTGTTCGGCGAGATTGCC20470494GGAATTTCCTTCAGCCCCGACACTGAAGCTCTGTTCATCGGAGTTGCTGA
Ligustrum vulgare genome assembly, chromosome: 17.
OY743184.1:5477535-5477554
CAAGAGATCGATCTGTTTGGGGAGATAGCT5477535GGAATTTCCTTCAGCCCCGATAGTGAAGCACTGTTTGTTGGAGTTGCAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGGGGCTGAAGGAAATTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGGGGCTGAAGGAAATTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.408 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGGGCTGAAGGAAATTCC&k=0&no_gap=0&offset=0&limit=50
0.872 | 0.464 | search_minus_done; http://172.18.8.135:50400/match?q=GGAATTTCCTTCAGCCCCGA&k=0&no_gap=0&offset=0&limit=42
0.879 | 0.007 | cgi_end;

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