GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 11:44:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
AC189388.2:57532-57552
AAATATTGACAACATAATTCTATAACTAAG57532TCGGTACGAAACTCAATGTTCATAACTTCTAAGAACTCGACACTCAAATAT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:738538-738558
AAATATTGACAACATAATTCTATAACTAAG738538TCGGTACGAAACTCAATGTTCATAACTTCTAAGAACTCGACACTCAAATAT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:631010-631030
AAATATTGACAACATAATTCTATAACTAAG631010TCGGTACGAAACTCAATGTTCATAACTTCTAAGAACTCGACACTCAAATAT
Brassica rapa genome, scaffold: A02.
LR031573.1:671793-671813
AAATATTGACAACATAATTCTATAACTAAG671793TCGGTACGAAACTCAATGTTCATAACTTCTAAGAACTCGACACTCAAATAT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:681793-681813
AAATATTGACAACATAATTCTATAACTAAG681793TCGGTACGAAACTCAATGTTCATAACTTCTAAGAACTCGACACTCAAATAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGGTACGAAACTCAATGTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGGTACGAAACTCAATGTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.167 | 0.158 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGTACGAAACTCAATGTTC&k=0&no_gap=0&offset=0&limit=50
0.252 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=GAACATTGAGTTTCGTACCGA&k=0&no_gap=0&offset=0&limit=45
0.252 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).