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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:53:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 10850 from patent US 7557201.
GP479853.1:323-345
TGTTGTTCCAAATGTCTTTTGTTAATTTCT323TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
Sequence 21521 from patent US 7557201.
GP490524.1:350-372
TTATTCCACAAATGTCTTTTGTTAATNTCT350TCGGTTTCAATAAAGTGATTGTGAAGGGAAGATTGTAAGCATAATGAGGTGAA
GA__Ea0029O13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0029O13f, mRNA sequence.
BE054786.2:343-365
TGTTGTTCCAAATGTCTTTTGTTAATTTCT343TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
GA__Ea0013G11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0013G11f, mRNA sequence.
BE055670.2:107-129
TGTTGTTCCAAATGTCTTTTGTTAATTTCT107TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
GA__Eb0005D17f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0005D17f, mRNA sequence.
BF269637.2:346-368
TGTTGTTCCAAATGTCTTTTGTTAATTTCT346TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGAAGCATAATGAGATGAAAT
GA__Eb0037H09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0037H09f, mRNA sequence.
BF277936.2:407-429
TGTTGTTCCAAATGTCTTTTGTTAATTATT407TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTTAGCATAATGAGATGAAA
GA__Eb0037J09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0037J09f, mRNA sequence.
BF277948.2:407-429
TGTTGTTCCAAATGTCTTTTGTTAATTTCT407TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
GA__Eb0032D10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032D10f, mRNA sequence.
BF278253.2:339-361
TGTTGTTCCAAATGTCTTTTGTTAATTTCT339TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
GA__Ed0081G02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0081G02f, mRNA sequence.
BQ405348.1:305-327
TGTTGTTCCAAATGTCTTTTGTTAATTTCT305TCGGTTTCAATAAAGTGATTGTGAACGAAGATTGTAAGCATAATGAGATGAAA
GR__Ea06G05.f GR__Ea Gossypium raimondii cDNA clone GR__Ea06G05 5', mRNA sequence.
CO087768.1:151-173
TTGTTCCACAAATGGCTTTTGTTAATTTCT151TCGGTTTCAATAAAGTGATTGTGAAGGAAAAGATTGTAAGCATAATGAGATGA
CM026A10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR454655.1:335-357
TTATTCCACAAATGTCTTTTGTTAATTTCT335TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
UFL_305_34 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES812743.1:341-363
TTATTCCACAAATGTCTTTTGTTAATTTCT341TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
UFL_087_17 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES842354.1:370-392
TGTTGTTCCAAATGTCTTTTGTTAATTTCT370TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
128A04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487831.1:337-359
TTATTCCACAAATGTCTTTTGTTAATTTCT337TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
153H05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV489059.1:339-361
TTATTCCACAAATGTCTTTTGTTAATTTCT339TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
D08_P2_063 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX164383.1:409-431
TTATTCCACAAATGTCTTTTGTTAATTTCT409TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
EST006405 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 31-K06 5', mRNA sequence.
GR713205.1:345-367
TTATTCCACAAATGTCTTTTGTTAATTTCT345TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
EST008837 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-F09 5', mRNA sequence.
GR715637.1:37-59
TGTTGTTCCAAATGTCTTTTGTTAATTTCT37TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
F08-110F08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796522.1:525-547
TTATTCCACAAATGTCTTTTGTTAATTTCT525TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
G09-062G9 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796859.1:525-547
TTATTCCACAAATGTCTTTTGTTAATTTCT525TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
B06-116B06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797169.1:535-557
TTATTCCACAAATGTCTTTTGTTAATTTCT535TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
E07-GC11293 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809422.1:414-436
TTATTCCACAAATGTCTTTTGTTAATTTCT414TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
D03-GC8188 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810164.1:336-358
TGTTGTTCCAAATGTCTTTTGTTAATTTCT336TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
A08-GC6497 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810374.1:361-383
TTATTCCACAAATGTCTTTTGTTAATTTCT361TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGGTGAAA
F09-GC4957 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810545.1:313-335
TGTTGTTCCAAATGTCTTTTGTTAATTTCT313TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
B12-GC4668 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810657.1:335-357
TGTTGTTCCAAATGTCTTTTGTTAATTTCT335TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
A02-GC0305 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810660.1:299-321
TGTTGTTCCAAATGTCTTTTGTTAATTTCT299TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
D12-GC7684 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810688.1:331-353
TGTTGTTCCAAATGTCTTTTGTTAATTTCT331TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGGGATGAAA
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:45097119-45097141
TGTTGTTCCAAATGTCTTTTGTTAATTTCT45097119TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:104390928-104390950
TGTTGTTCCAAATGTCTTTTGTTAATTTCT104390928TCGGTTTCAATAAAGTGATTGTGAAGGAAGATTGTAAGCATAATGAGATGAAA
rayctn0_0084_B11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO095603.1:93-115
TTTCACCTCATTATGCTTACAATCTTCCTT93CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGTGGAATAA
rayctn0_0116_C08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098108.1:108-130
TTTCACCTCATTATGCTTACAATCTTCCTT108CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGTGGAATAA
rayctn0_0120_D04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098443.1:129-151
TTTCATCCCATTATGCTTACAATCTTCCTT129CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGGAACAACA
rayctn0_0152_A10.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO100933.1:129-151
TTTCATCCCATTATGCTTACAATCTTCCTT129CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGGAACAACA
rayctn0_0158_F01.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO101466.1:108-130
TTTCACCTCATTATGCTTACAATCTTCCTT108CACAATCACTTTATTGAAACCGAAAAAATTAACAAAAGACATTTGTGGAATAA
rcrycc0_0019_C09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO108059.1:108-130
TTTCACCTCATTATGCTTACAATCTTCCTT108CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGTGGAATAA
rcrycc0_0054_B04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO110681.1:56-78
TTTCATCCCATTATGCTTACAATCTTCCTT56CACAATCACTTTATTGAAACCGAAAAAATTAACAAAAGACATTTGGAACAACA
G04_51611.76.S1108242767.LDYN1-8140.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117718.1:158-180
TTTCACCTCATTATGCTTACAATCTTCCTT158CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGTGGAATAA
Gossypioides kirkii chromosome KI_01.
CP032244.1:9529735-9529757
TTTCATCTCATTATGCTTACAATCTTCCTT9529735CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGGAGCAGCA
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:15190857-15190879
TCATCTCATTATGCTTACAATCTTTTCCTT15190857CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGCCATTTGTGGAACAA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:21268423-21268445
TTTCATCTCATTATGCTTACAATCTTCCTT21268423CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGGAACAACA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:25739066-25739088
TTTCATCTCATTTTGCTTACAAGCTTCCTT25739066CACAATCACTTTATTGAAACCGAAGAAATTAACAAAAGACATTTGGAACAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGGTTTCAATAAAGTGATTGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGGTTTCAATAAAGTGATTGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.535 | 1.526 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGTTTCAATAAAGTGATTGTG&k=0&no_gap=0&offset=0&limit=50
2.236 | 0.701 | search_minus_done; http://172.18.8.135:50400/match?q=CACAATCACTTTATTGAAACCGA&k=0&no_gap=0&offset=0&limit=20
2.244 | 0.008 | cgi_end;

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