GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:52:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-049O01, 5' end sequence.
DK474610.1:608-627
TCGCCACCACCGCAGTCTCCGCCGCCACCG608TCGTCGCTGATGTTCATGAGACTAATGAATCAGCTGAGCCGGTGGTTGAT
Brassica oleracea var. viridis mRNA, clone: KALE-100F04, 5' end sequence.
DK493921.1:620-639
TCGCCACCACCGCAGTCTCCGCCGCCACCG620TCGTCGCTGATGTTCATGAGACTAATGAATCAGCTGAGCCGGTGGTTGAT
35ETGS60_UP_001_G03_24MAR2004_019 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431202.1:614-633
TCGCCACCACCGCAGTCTCCGCCGCCACCG614TCGTCGCTGATGTTCATGAGACTGATGAATCAGCTGAGCCGGTGGTTGAT
BNARO5GH_T3_025_G06_01DEC2006_036 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES907991.1:595-614
CCGCCACCACAGCAGTCTCCGCCGCCACCG595TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
BNAEN1GH_UP_080_D06_23JUL2006_042 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES992516.1:613-632
TCGCCACCACCGCAGTCTCCGCCGCCACCG613TCGTCGCTGATGTTCATGAGACTGATGAATCAGCTGAGCCG
0136858 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV221750.1:160-179
TCGCCACCACCGCAGTCTCCGCCGCCACCG160TCGTCGCTGATGTTCATGAGACTGATGAATCAGCTGAGCCGGTGGTTGAT
BOGSW07TF BOGS Brassica oleracea genomic clone BOGSW07, genomic survey sequence.
BH597954.1:711-730
TCGCCACCACCGCAGTCTCCGCCGCCACCG711TCGTCGCTGATGTTCATGAGACTGATGAATCAGCTGAGCCGGTGGTTGAT
BOOAO65TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAO65, genomic survey sequence.
BZ490716.1:616-635
TCGCCACCACCGCAGTCTCCGCCGCCACCG616TCGTCGCTGATGTTCATGAGACTGATGAATCACCTGAGCCGGTGGTTGAT
KBrB009B13F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB009B13, genomic survey sequence.
DX016814.1:49-68
CCGCCACCACAGCAGTCTCCGCCGCCACCG49TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
KBrB036H01F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB036H01, genomic survey sequence.
DX037573.1:58-77
CCGCCACCACAGCAGTCTCCGCCGCCACCG58TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
AC189319.1:61-80
CCGCCACCACAGCAGTCTCCGCCGCCACCG61TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:61649135-61649154
CCGCCACCACAGCAGTCTCCGCCGCCACCG61649135TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:45475831-45475850
CCGCCACCACAGCAGTCTCCGCCGCCACCG45475831TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:31891792-31891811
TCGCCACCACCGCAGTCTCCGCCGCCACCG31891792TCGTCGCTGATGTTCATGAGACTGATGAATCAGCTGAGCCGGTGGTTGAT
Brassica rapa genome, scaffold: A09.
LR031568.1:49780453-49780472
CCGCCACCACAGCAGTCTCCGCCGCCACCG49780453TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:41146486-41146505
TCGCCACCACCGCAGTCTCCGCCGCCACCG41146486TCGTCGCTGATGTTCATGAGACTAATGAATCAGCTGAGCCGGTGGTTGAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:60252337-60252356
CCGCCACCACAGCAGTCTCCGCCGCCACCG60252337TCGTCGCTGATGTTCATGAGGCTGATGATTCAGCTGAGCCGGTGATTGAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3509.
FX701992.1:797-816
ATCAATCACCGGCTCAGCTGAATCATCAGC797CTCATGAACATCAGCGACGACGGTGGCGGCGGAGACTGCTGTGGTGGCGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29283.
FX736798.1:797-816
ATCAATCACCGGCTCAGCTGAATCATCAGC797CTCATGAACATCAGCGACGACGGTGGCGGCGGAGACTGCTGTGGTGGCGG
BOGKV74TR BOGK Brassica oleracea genomic clone BOGKV74, genomic survey sequence.
BH535757.1:405-424
ATCAACCACCGGCTCAGCTGATTCATCAGT405CTCATGAACATCAGCGACGACGGTGGCGGCGGAGACTGCGGTGGTGGCGA
KBrH079N08F KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH079N08, genomic survey sequence.
DU986701.1:792-811
ATCAATCACCGGCTCAGCTGAATCATCAGC792CTCATGAACATCAGCGACGACGGTGGCGGCGGAGACTGCTGTGGTGGCGG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:9894794-9894813
ATCAACCACCGGCTCAGCTGATTCATCAGT9894794CTCATGAACATCAGCGACGACGGTGGCGGCGGAGACTGCGGTGGTGGCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGTCGCTGATGTTCATGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTCGCTGATGTTCATGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.672 | 0.663 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTCGCTGATGTTCATGAG&k=0&no_gap=0&offset=0&limit=50
0.765 | 0.093 | search_minus_done; http://172.18.8.135:50400/match?q=CTCATGAACATCAGCGACGA&k=0&no_gap=0&offset=0&limit=33
0.768 | 0.003 | cgi_end;

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