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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_18163.
FX671357.1:953-972
ACACCTATCAAGTAAAGAAGACGCAGAGAC953TCGTCTAGCTGCCTTTTGGTACGACGTTGTGCCTCCTCTTCTTCTTCTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_40978.
FX793609.1:723-742
ACACCTATCAAGTAAAGAAGACGCAGAGAC723TCGTCTAGCTGCCTTTTGGTACGACGTTGTGCCTCCTCTTCTTCTTCTTC
TSA: Raphanus sativus RS18253 mRNA sequence.
JT802800.1:1009-1028
ACACCTATCAAGTAAAGAAGACGCAGAGAC1009TCGTCTAGCTGCCTTTTGGTACGACGTTGTGCCTCCTCTTCTTCTTCTTC
Antedon bifida genome assembly, chromosome: 7.
OY727099.1:6056216-6056235
CTGTCCAAGAGCTGCGAAATCGAATTTTGG6056216TCGTCTAGCTGCCTTTTGGTTACGCCTACTTGAATAAACACCTGGAAAAT
RR3DU39TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915452.1:520-539
GAAGAAGAAGAAGAGGAGGCACAACGTCGT520ACCAAAAGGCAGCTAGACGAGTCTCTGCGTCTTCTTTACTTGATAGGTGT
Raphanus sativus mRNA, clone: RSCS07B04, 5' end sequence.
FY448288.1:487-506
GAAGAAGAAGAAGAGGAGGCACAACGTCGT487ACCAAAAGGCAGCTAGACGAGTCTCTGCGTCTTCTTTACTTGATAGGTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGTCTAGCTGCCTTTTGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTCTAGCTGCCTTTTGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.216 | 0.208 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTCTAGCTGCCTTTTGGT&k=0&no_gap=0&offset=0&limit=50
0.457 | 0.241 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAAAAGGCAGCTAGACGA&k=0&no_gap=0&offset=0&limit=46
0.459 | 0.002 | cgi_end;

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