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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1BL55TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX886744.1:210-229
CTTCGAATCTCAACGTCTCTCCTCCGAATG210TCGTCTCCGTTCCTCCTCTACCTCGTCGATCTTGGCGTCTCGCCTCTTCC
RS2D947TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937551.1:240-259
CTTCGAATCTCAACGTCTCTCCTCCGAATG240TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
RS2E249TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940076.1:54-73
CTTCCAATCTCAACGTCTCTCCTCCGAATG54TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
RS3EZ44TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD578272.1:184-203
CTTCGAATCTCAACGTCTCTCCTCCGAATG184TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCF20P19, 5' end sequence.
FY433157.1:43-62
CTTCGAATCTCAACGTCTCTCCTCCGAATG43TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCL02O04, 5' end sequence.
FY433797.1:194-213
CTTCGAATCTCAACGTCTCTCCTCCGAATG194TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCR06H22, 5' end sequence.
FY441642.1:17-36
GTCTCTCCTCCGAATG17TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCS01M08, 5' end sequence.
FY446473.1:213-232
CTTCGAATCTCAACGTCTCTCCTCCGAATG213TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCS14A07, 5' end sequence.
FY450732.1:197-216
CTTCGAATCTCAACGTCTCTCCTCCGAATG197TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCS16I18, 5' end sequence.
FY451628.1:182-201
CTTCGAATCTCAACGTCTCTCCTCCGAATG182TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus mRNA, clone: RSCS24A16, 5' end sequence.
FY454323.1:194-213
CTTCGAATCTCAACGTCTCTCCTCCGAATG194TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
TSA: Raphanus sativus RS01991 mRNA sequence.
JT786538.1:117-136
CTTCGAATCTCAACGTCTCTCCTCCGAATG117TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:13649840-13649859
CTTCGAATCTCAACGTCTCTCCTCCGAATG13649840TCGTCTCCGTTCCTCCTCTACCTCGCCGATCTTGGCGTCTCGCCTCTTCC
Phosphuga atrata genome assembly, chromosome: 16.
OX155908.1:21802653-21802672
TTCCTCCTGTCCTTTCCTCCTCTCCTTTCC21802653TCGTCTCCGTTCCTCCTCTACTTGCCTCCTCTCCTTTCCTCCTCTCCTTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8924.
FX658893.1:1281-1300
GGAAGAGGCGAGACGCCAAGATCGGCGAGG1281TAGAGGAGGAACGGAGACGACATTCGGAGGAGAGACGTTGAGATTCGAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8416.
FX747930.1:744-763
GGAAGAGGCGAGACGCCAAGATCGGCGAGG744TAGAGGAGGAACGGAGACGACATTCGGAGGAGAGACGTTGAGATTCGAAG
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:15244442-15244461
GGAAGAGGCGAGACGCCAAGATCGGCGAGG15244442TAGAGGAGGAACGGAGACGACATTCGGAGGAGAGACGTTGAGATTCGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGTCTCCGTTCCTCCTCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTCTCCGTTCCTCCTCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.462 | 1.454 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTCTCCGTTCCTCCTCTA&k=0&no_gap=0&offset=0&limit=50
1.577 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAGGAGGAACGGAGACGA&k=0&no_gap=0&offset=0&limit=36
1.579 | 0.002 | cgi_end;

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