GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:57:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OPYF00449 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 175-B7-T3.seq, mRNA sequence.
EL681379.1:435-458
GAATGATCAACTAAAGGCTGACGCGAAGGC435TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
OPMF00697 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 123-C12-T3.seq, mRNA sequence.
EL684459.1:438-461
GAATGATCAACTAAAGGCTGAGGCGAAGGC438TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
OPMF01309 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 133-F12-T3.seq, mRNA sequence.
EL685069.1:408-431
GAATGATCAACTAAAGGCTGAGGCGAAGGC408TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
pOP-CAP00346_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00346 5', mRNA sequence.
EY396147.1:424-447
GAATGATCAACTAAAGGCTGAGGCGAATGC424TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
pOP-EO03394_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03394 5', mRNA sequence.
EY413026.1:434-457
GAATGATCAACTAAAGGCTGAGGCGAAGGC434TCGTGGCGACATCATCAGCACAAAGC
EG-M11_004_D11 InfSSHM1, normal male inflorescence Elaeis guineensis cDNA clone EG-M11_004_D11 non-orientated, mRNA sequence.
GT119365.1:225-248
GAATGATCAACTAAAGGCTGAGGCGAAGGC225TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
EG-M21_007_F04 InfSSHM2, mantled male inflorescence Elaeis guineensis cDNA clone EG-M21_007_F04 non-orientated, mRNA sequence.
GT120430.1:262-285
GAATGATCAACTAAAGGCTGAGGCGAAGGC262TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
EG-E11_006_A03 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_006_A03, mRNA sequence.
JK668962.1:274-297
GAATGATCAACTAAAGGCTGAGGCGAAGGC274TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
EG-E11_010_G07 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_010_G07, mRNA sequence.
JK669420.1:262-285
GAATGATCAACTAAAGGCTGAGGCGAAGGC262TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
TSA: Elaeis guineensis isotig08727.Elguifruit mRNA sequence.
JO095957.1:433-456
GAATGATCAACTAAAGGCTGAGGCGAAGGC433TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
Elaeis guineensis 60S ribosomal protein L21 (RPL21) mRNA, complete cds.
KC146060.1:472-495
GAATGATCAACTAAAGGCTGAGGCGAAGGC472TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT
EG-A01_004_D05 Oil palm normal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599489.1:350-373
AAACCAGGCTTGGGGCCTTCAGGCTGCCGC350TTTGTGCTGATGATGTCGCCACGAGCCTTCGCCTCAGCCTTTAGTTGATCATTC
Elaeis guineensis EST, clone (6lib)_isotig05713.
LM629996.1:336-359
AAACCAGGCTTGGGGCCTTCAGGCTGCCGC336TTTGTGCTGATGATGTCGCCACGAGCCTTCGCCTCAGCCTTTAGTTGATCATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGTGGCGACATCATCAGCACAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTGGCGACATCATCAGCACAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.736 | 0.727 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTGGCGACATCATCAGCACAAA&k=0&no_gap=0&offset=0&limit=50
0.898 | 0.163 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTGCTGATGATGTCGCCACGA&k=0&no_gap=0&offset=0&limit=39
0.900 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).