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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 15:39:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH096A17R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH096A17, genomic survey sequence.
DU111886.1:22-43
ATTTTTCTGAAAACTTAATCA22TCGTTCTCGAATGTGAATTGTCTAAACATCCTTTTTATATATACAAAACTTG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:36865408-36865429
TTTATTGTTGCTTTTCTAGAAACTTAATCA36865408TCGTTCTCGAATGTGAATTGTCTAAACTTTCCTTTTATTTATTGTCTTTGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080L24, complete sequence.
AC155345.1:58090-58111
CAAGTTTTGTATATATAAAAAGGATGTTTA58090GACAATTCACATTCGAGAACGATGATTAAGTTTTCAGAAAAATAACAATAAA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12805162-12805183
CAAGTTTTGTATATATAAAAAGGATGTTTA12805162GACAATTCACATTCGAGAACGATGATTAAGTTTTCAGAAAAATAACAATAAA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12785595-12785616
CAAGTTTTGTATATATAAAAAGGATGTTTA12785595GACAATTCACATTCGAGAACGATGATTAAGTTTTCAGAAAAATAACAATAAA
Brassica rapa genome, scaffold: A09.
LR031568.1:39586791-39586812
CAAGTTTTGTGTATATAAAAGGAATGTTTA39586791GACAATTCACATTCGAGAACGATGATTAAGTTTCCAAAAAAATAACAATAAA
Brassica rapa genome, scaffold: A05.
LR031570.1:18527750-18527771
CAAGTTTTGTATATATAAAAAGGATGTTTA18527750GACAATTCACATTCGAGAACGATGATTAAGTTTTCAGAAAAATAACAATAAA
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12617904-12617925
CAAGTTTTGTATATATAAAAAGGATGTTTA12617904GACAATTCACATTCGAGAACGATGATTAAGTTTTCAGAAAAATAACAATAAA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:50035345-50035366
CAAGTTTTGTGTATATAAAAGGAATGTTTA50035345GACAATTCACATTCGAGAACGATGATTAAGTTTCCAAAAAAATAACAATAAA

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GGGenome by @meso_cacase at DBCLS
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