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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 11:43:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Trifolium pratense DNA, clone:RCG02345.
DE213985.1:1-20
1TCGTTTTCAAACTGTCATCGAAAACAAAGTAAACAAAAAAGAATTAAAAT
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:78935611-78935630
GCACCCTGTATAATTTACCGGCAATGCAGT78935611TCGTTTTCAAACTGTCATCGAAAACAAAGTAAACAAAAAAGAATTAAAAT
Labrenzia sp. THAF191b chromosome, complete genome.
CP045328.1:4108405-4108424
CTGATATCGTCAAGGACGGCGACAACACGA4108405TCGTTTTCAAACTGTCATCGGGCAATGCGGATCTGCCGTGGCTCATGACC
Labrenzia sp. THAF191a chromosome, complete genome.
CP045333.1:4108405-4108424
CTGATATCGTCAAGGACGGCGACAACACGA4108405TCGTTTTCAAACTGTCATCGGGCAATGCGGATCTGCCGTGGCTCATGACC
Labrenzia sp. THAF187b chromosome, complete genome.
CP045344.1:4108405-4108424
CTGATATCGTCAAGGACGGCGACAACACGA4108405TCGTTTTCAAACTGTCATCGGGCAATGCGGATCTGCCGTGGCTCATGACC
TSA: Hynobius retardatus mRNA, contig: comp188839_c1_seq5.
LE177688.1:3687-3706
AACCTCATTCCAGAGAACCATGGACAGCAT3687CGATGACAGTTTGAAAACGATCGCTAGGTCGAGTGAAAGGCTTGCCGTAT
TSA: Hynobius retardatus mRNA, contig: comp188839_c1_seq7.
LE177690.1:1765-1784
AACCTCATTCCAGAGAACCATGGACAGCAT1765CGATGACAGTTTGAAAACGATCGCTAGGTCGAGTGAAAGGCTTGCCGTAT
TSA: Hynobius retardatus mRNA, contig: comp188839_c1_seq10.
LE177693.1:6930-6949
AACCTCATTCCAGAGAACCATGGACAGCAT6930CGATGACAGTTTGAAAACGATCGCTAGGTCGAGTGAAAGGCTTGCCGTAT
Lotus japonicus genomic DNA, chromosome 2, clone: LjT33B06, TM1150.
AP007846.2:14535-14554
ATTTTAATTCTTTTTTGTTTACTTTGTTTT14535CGATGACAGTTTGAAAACGAACTGCATTGCCGGTAAATTATACAGGGTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGTTTTCAAACTGTCATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTTTTCAAACTGTCATCG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.367 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTTTTCAAACTGTCATCG&k=0&no_gap=0&offset=0&limit=50
0.514 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGACAGTTTGAAAACGA&k=0&no_gap=0&offset=0&limit=45
0.517 | 0.003 | cgi_end;

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