GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 12:18:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Cannabis sativa PK23406.1_1.CasaPuKu mRNA sequence.
JP449777.1:78-97

CTTATAACAGATCCATAGTTTGTTTCAATA78TCTACCGTTCTCTGTTCTTGATATATGTACATAACAGTGGTTTCATATCT

Carassius carassius genome assembly, chromosome: 39.
OY720506.1:25958675-25958694

CACAATGCACTGCTGAGGCATGACATCCTT25958675CAAGAACAGAGAACGGTAGATCAGTATCAGAATGCATAGGTCGACAAGTC

Allium cepa genome assembly, chromosome: 7.
LR994635.1:105495461-105495480

CACTAAAGAACGAAACTATCTGGACAAAGT105495461CAAGAACAGAGAACGGTAGAAAAACCTAGGAAGTCTTAAGCTCCTTCGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.127 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=TCTACCGTTCTCTGTTCTTG&k=0&no_gap=0&offset=0&limit=50
0.158 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGAACAGAGAACGGTAGA&k=0&no_gap=0&offset=0&limit=49
0.160 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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