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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 08:04:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_52811.
FX741371.1:1012-1031
ATTATATTTCTCTTTTTGGTTCTCTTGTCC1012TCTAGATCAGCAGCTGCTAGTCTGACAAAGAGATCCTGACCTCCCTTAGC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737398.1:423525108-423525127
GGAAGAGAAGGTGGGACTACAGAACTCTTG423525108TCTAGATCAGCAGCTGCTAGGTCCAACATTTCACTCTCAGTATTAACATT
Coenonympha glycerion genome assembly, chromosome: 19.
OY979645.1:2005508-2005527
TTCAACACATATTTTGAAATATCCAATTTG2005508TCTAGATCAGCAGCTGCTAGATCATGAAACAATAATGCCTATTCGGGTTT
Sequence 95374 from Patent WO2008034648.
FB876101.1:1291-1310
GCTAAGGGAGGTCAGGATCTCTTTGTCAGA1291CTAGCAGCTGCTGATCTAGAGGACAAGAGAACCAAAAAGAGAAATATAAT
Sequence 95374 from Patent EP2090662.
HB746160.1:1291-1310
GCTAAGGGAGGTCAGGATCTCTTTGTCAGA1291CTAGCAGCTGCTGATCTAGAGGACAAGAGAACCAAAAAGAGAAATATAAT
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737383.1:426898131-426898150
AATCTTAATACTGAGAATGAAATGTTGGAC426898131CTAGCAGCTGCTGATCTAGACAAGAGTTATGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737390.1:442049789-442049808
AATGTTAATACTGAGAATGAAATGTTGGAC442049789CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737405.1:428802092-428802111
AATGTTAATACTGAGAATGAAATGTTGGAC428802092CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737415.1:429478134-429478153
AATGTTAATACTAAGAATGAAATGTTGGAC429478134CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737422.1:429478134-429478153
AATGTTAATACTAAGAATGAAATGTTGGAC429478134CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737433.1:349199950-349199969
AATGTTAATACTAAGAATGAAATGTTGGAC349199950CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737440.1:345599328-345599347
AATGTTAATACTAAGAATGAAATGTTGGAC345599328CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737466.1:398684458-398684477
AATGTTAATACTGAGAATGAAATGTTGGAC398684458CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737473.1:412649646-412649665
AATGTTAATACTGAGAATCAAATGTTGGAC412649646CTAGCAGCTGCTGATCTAGAAAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737487.1:395209493-395209512
AATGTTAATACTGAGAATGAAATGTTGGAC395209493CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737495.1:362166647-362166666
AATCTTAATACTGAGAATGAAATGTTGGAC362166647CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_3.
OY737509.1:400602821-400602840
AATGTTAATACTGAGAATGAAATGTTGGAC400602821CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737531.1:399643563-399643582
AATCTTAATACTGAGAATGAAATGTTGGAC399643563CTAGCAGCTGCTGATCTAGACAAGAGTTATGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_3.
OY737538.1:132447061-132447080
AATCTTAATACTGAGAATGAAATGTTGGAC132447061CTAGCAGCTGCTGATCTAGACAAGAGTTATGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737617.1:394596833-394596852
AATGTTAATACTGAGAATGAAATGTTGGAC394596833CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737624.1:427837434-427837453
AATCTTAATACTGAGAATGAAATGTTGGAC427837434CTAGCAGCTGCTGATCTAGACAAGAGTTATGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_3.
OY737631.1:402921379-402921398
AATGTTAATACTGAGAATGAAATGTTGGAC402921379CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737653.1:421602733-421602752
AATCTTAATACTGAGAATGAAATGTTGGAC421602733CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737667.1:386545462-386545481
AATGTTAATACTGAGAATGAAATGTTGGAC386545462CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737667.1:386561085-386561104
AATGTTAATACTGAGAATGAAATGTTGGAC386561085CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737872.1:414261792-414261811
AATGTTAATACTGAGAATGAAATGTTGGAC414261792CTAGCAGCTGCTGATCTAGACAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737893.1:425973224-425973243
AATGTTAATACTGAGAATCAAATGTTGGAC425973224CTAGCAGCTGCTGATCTAGAAAAGAGTTCTGTAGTCCCACCTTCTCTTCC
Brassica oleracea mRNA for SFR1 protein.
Y14285.1:1298-1317
GCTAAGGGAGGTCAGGATCTCTTTGTCAGA1298CTAGCAGCTGCTGATCTAGAGGACAAGAGAACCAAAAAGAGAAATATAAT
Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:1943922135-1943922154
GGTTAACAGTGAAGATGCCTCGCACGTGAC1943922135CTAGCAGCTGCTGATCTAGAAGCCAGGGTTGGAGGATTATGAAGCGTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTAGATCAGCAGCTGCTAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTAGATCAGCAGCTGCTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=TCTAGATCAGCAGCTGCTAG&k=0&no_gap=0&offset=0&limit=50
0.164 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=CTAGCAGCTGCTGATCTAGA&k=0&no_gap=0&offset=0&limit=47
0.181 | 0.017 | cgi_end;

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