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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1AI63TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW714378.1:169-190
AAATCTCTCCACAGATCGTTCCATAAACTC169TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGA
RS3CF40TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905033.1:177-198
AAATCTCTCCACAGATCGTTCCATAAACTC177TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
RR4DT53TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923652.1:203-224
AAATCTCTCCACAGATCGTTCCATAAACTC203TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
RR4E094TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY924323.1:181-202
AAATCTCTCCACAGATCGTTCCATAAACTC181TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCATGGTCCCCGTGG
RR4EA48TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925135.1:181-202
AAATCTCTCCACAGATCGTTCCATAAACTC181TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCATGGTCCCCGTGG
RR4EJ81TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD556316.1:222-243
AAATCTCTCCACAGATCGTTCCATAAACTC222TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCATGGTCCCCGTGG
RR4EM79TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD556572.1:222-243
AAATCTCTCCACAGATCGTTCCATAAACTC222TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCATGGTCCCCGTGG
RS2FD93TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570394.1:222-243
AAATCTCTCCACAGATCGTTCCATAAACTC222TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
RS2GD34TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946612.1:217-238
AAATCTCTCCACAGATCGTTCCATAAACTC217TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
RS2HH41TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD950062.1:222-243
AAATCTCTCCACAGATCGTTCCATAAACTC222TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
Raphanus sativus mRNA, clone: RSCS12P22, 5' end sequence.
FY450365.1:160-181
AAATCCCTTCACAGATCTTTCCATAAAATC160TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCTGTGG
Raphanus sativus mRNA, clone: RSCS21P09, 5' end sequence.
FY453579.1:90-111
AAATCCCTTCACAGATCTTTCCATAAAATC90TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCTGTGG
0275790 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO938484.1:216-237
AAATCTCTCCACAGATCGTTCCATAAACTC216TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCCGTGG
Isatis tinctoria cytochrome P450 71B22-1 (CYP71B22-1) gene, complete cds.
MT145677.1:166-187
AAATCTCTCCACAGATCTTTCCATAAACTC166TCTCAAGATTATGGACCCGTGATGTTTCTTCGATTCGGCGTGGTCCCTGTGG
KR 1020200071312-A/206: A Set Of Single Nucleotide Polymerphism Probe For Backcross Analysis Or Distinction Of Raphanus Sativus.
LY817125.1:91-112
YCACGGGGACCACGCCGAATCGAAGAAACA91TCACGGGTCCATAATCTTGAGAGAGTTTATG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3262.
FX657982.1:1437-1458
CCACGGGGACCACGCCGAATCGAAGAAACA1437TCACGGGTCCATAATCTTGAGAGAGTTTATGGAACGATCTGTGGAGAGATTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11861.
FX731337.1:1363-1384
TCACGGGGACCACGCCGAATCGAAGAAACA1363TCACGGGTCCATAATCTTGAGAGAGTTTATGGAACGATCTGTGGAGAGATTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_64209.
FX769600.1:249-270
CCACAGGGACCACGCCGAATCGAAGAAACA249TCACGGGTCCATAATCTTGAGAGATTTTATGGAAAGATCTGTGAAGGGATTT
TSA: Raphanus sativus RS19254 mRNA sequence.
JT803801.1:1489-1510
CCACAGGGACCACGCCGAATCGAAGAAACA1489TCACGGGTCCATAATCTTGAGAGATTTTATGGAAAGATCTGTGAAGGGATTT
TSA: Raphanus sativus RS26568 mRNA sequence.
JT811115.1:1491-1512
CCACGGGGACCACGCCGAATCGAAGAAACA1491TCACGGGTCCATAATCTTGAGAGAGTTTATGGAACGATCTGTGGAGAGATTT
SIR-53H9JR Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-53H9, genomic survey sequence.
FI825611.1:930-951
CCACAGGGACCACGCCGAATCGAAGAAACA930TCACGGGTCCATAATCTTGAGAGAGTTTATGGAAAGATCGGTGGAGAGATTT
BH_PBa036P08.R BH_PBa Boechera holboellii genomic 3', genomic survey sequence.
KS406183.1:163-184
CCACAGGGACCACACCGAAATGAAGAAACA163TCACGGGTCCATAATCTTGAGAGAGTTTATGAAAAGATCTGTGGAGAGATTT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:15418340-15418361
CCACGGGGACCACGCCGAATCGAAGAAACA15418340TCACGGGTCCATAATCTTGAGAGAGTTTATGGAACGATCTGTGGAGAGATTT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:15418340-15418361
CCACGGGGACCACGCCGAATCGAAGAAACA15418340TCACGGGTCCATAATCTTGAGAGAGTTTATGGAACGATCTGTGGAGAGATTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTCAAGATTATGGACCCGTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTCAAGATTATGGACCCGTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.131 | 1.122 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCAAGATTATGGACCCGTGA&k=0&no_gap=0&offset=0&limit=50
1.410 | 0.280 | search_minus_done; http://172.18.8.135:50400/match?q=TCACGGGTCCATAATCTTGAGA&k=0&no_gap=0&offset=0&limit=36
1.417 | 0.007 | cgi_end;

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