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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:24:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a009C01_SP6.
AM386254.1:266-285
CTTGTTCTGTGTATGTACGTATTGTAAATT266TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
RS1BO74JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891273.1:315-334
GTAAACAACAATATGTACGCATTGTAGATT315TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
RR4DR08JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY919234.1:111-130
GAAACAACAATATGTACCGTATTGTAGATT111TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
RR2FO36JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD539479.1:202-221
GTAAACAACAATATGTACGTATTGCAGATT202TCTCCGTGTTTATTCGGACCGCACTCTATCCAATCTATCAACGCTCTTCC
RR3GO34JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976314.1:227-246
GAAACAACAATATGTACCGTATTGTAGATT227TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
Raphanus sativus mRNA, clone: RSCS01D12, 5' end sequence.
FY446276.1:211-230
GTAAACAACAATATGTACGCATTGTAGATT211TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
BOT01-95C2TR BOT01 Brassica oleracea genomic clone BOT01-95C2, genomic survey sequence.
FI744458.1:64-83
CTTGTTCTGTGTATGTACGTATTGTAGATT64TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
BOT01-108H4TR BOT01 Brassica oleracea genomic clone BOT01-108H4, genomic survey sequence.
FI751394.1:721-740
CTTGTTCTGTGTATGTACGTATTGTAGATT721TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:6431268-6431287
CTTGTTCTGTGTATGTACGTATTGTAGATT6431268TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:29739040-29739059
GTAAACAACAATATGTACGCATTGTAGATT29739040TCTCCGTGTTTATTCGGACCGTACTCTATCCAATCTATCAACACTCTTCC
Brassica oleracea var. viridis mRNA, clone: KALE-099A14, 3' end sequence.
DK553006.1:539-558
GGAAGAGTGTTGATAGATTGGATAGAGTAC539GGTCCGAATAAACACGGAGAAATTTACAATACGTACATACACAGAACAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5892.
FX664195.1:1267-1286
GGAAGAGTGTTGATAGATTGGATAGAGTAC1267GGTCCGAATAAACACGGAGAAATCTACAATGCGTACATATTGTTGTTTAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4622.
FX739829.1:1262-1281
GGAAGAGTGTTGATAGATTGGATAGAGTAC1262GGTCCGAATAAACACGGAGAAATCTACAATGCGTACATATTGTTGTTTAC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:59024044-59024063
GGAAGAGTGTTGATAGATTGGATAGAGTAC59024044GGTCCGAATAAACACGGAGAAATCTACAATACGTACATACACAGAACAAG
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:57159964-57159983
GGAAGAGTGTTGATAGATTGGATAGAGTAC57159964GGTCCGAATAAACACGGAGAAATCTACAATACGTACATACACAGAACAAG
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:3240342-3240361
GGAAGAGTGTTGATAGATTGGATAGAGTAC3240342GGTCCGAATAAACACGGAGAAATCTACAATGCGTACATATTGTTGTTTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTCCGTGTTTATTCGGACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTCCGTGTTTATTCGGACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.687 | 0.678 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCCGTGTTTATTCGGACC&k=0&no_gap=0&offset=0&limit=50
0.858 | 0.171 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCCGAATAAACACGGAGA&k=0&no_gap=0&offset=0&limit=40
0.862 | 0.004 | cgi_end;

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