GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:50:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS24018C08 KS24 Capsicum annuum cDNA, mRNA sequence.
GD119556.1:265-284
TTTAAGTCCATCTTATCTGTTTTGAGAAAA265TCTCGATTTTGCGATCTTCAGCACTTTACCTACAATTGTCTTGGGAATTA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:113211989-113212008
TTTAAGTCCATCTTATCTGTTTTGAGAAAA113211989TCTCGATTTTGCGATCTTCAGCACTTTACCTACAATTGTCTTGGGAATTA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:112988904-112988923
TTTAAGTCCATCTTATCTGTTTTGAGAAAA112988904TCTCGATTTTGCGATCTTCAGCACTTTACCTACAATTGTCTTGGGAATTA
Sphenostylis stenocarpa genome assembly, chromosome: 3.
OY731400.1:25909372-25909391
AGACCACCGTTTGGGATTTTGGGACGACGG25909372TCTCGATTTTGCGATCTTCAGGACCACCGTCTGGAAAGCAAGACGATGGT
Hofmannophila pseudospretella genome assembly, chromosome: 12.
OX376323.1:7794852-7794871
TCTCTTTTTAGAAAGCTCTCTTTCTAGAAA7794852TCTCGATTTTGCGATCTTCACATATTCCTACCTGTACAACTGGATATACG
TSA: Capsicum annuum MGMT_Contig37025 mRNA sequence.
JW087269.1:1372-1391
TAATTCCCAAGACAATTGTAGGTAAAGTGC1372TGAAGATCGCAAAATCGAGATTTTCTCAAAACAGATAAGATGGACTTAAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:119054636-119054655
TAATTCCCAAGACAATTGTAGGTTAAGTGC119054636TGAAGATCGCAAAATCGAGATTTTCTCAAACAGATAAGATGGACTTAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTCGATTTTGCGATCTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTCGATTTTGCGATCTTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.178 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCGATTTTGCGATCTTCA&k=0&no_gap=0&offset=0&limit=50
0.216 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGATCGCAAAATCGAGA&k=0&no_gap=0&offset=0&limit=45
0.217 | 0.001 | cgi_end;

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