GGGenome | Results

2025-04-08 17:17:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EL3247F Brassica embryo library (EL) Brassica napus cDNA clone EL3247 3', mRNA sequence.
CN829015.1:344-363

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC344TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

OL2340F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2340, mRNA sequence.
EH416428.1:309-328

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC309TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

0096469 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153197.1:418-437

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC418TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

0134947 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV219839.1:341-360

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC341TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

BR018955 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-154D02 5', mRNA sequence.
EX034311.1:230-249

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC230TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

BR023709 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-060E09 5', mRNA sequence.
EX039065.1:229-248

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC229TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

BR049375 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-04G03 5', mRNA sequence.
EX064731.1:95-114

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC95TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

BR115492 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-11B01 5', mRNA sequence.
EX131662.1:366-385

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC366TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

BR117482 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-36D05 5', mRNA sequence.
EX133652.1:355-374

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC355TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

BR121422 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-86F07 5', mRNA sequence.
EX137592.1:375-394

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC375TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

0254802 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO933237.1:346-365

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC346TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

0271920 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO962640.1:347-366

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC347TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_20580.
FX700074.1:248-267

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC248TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_58804.
FX734944.1:220-239

AGTTCCCAAAGAAAGTACCCTTGAGTGTCC220TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAGGCATCGTCTTTGCTC

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1265693-1265712

AGTTGCCAAAGAAAGTACCCTTGAGTGTCC1265693TCTCGTTCAGGAGGTTCATCGGATGAGTCTTGAAAGCGTCGTCTTTGCTC

Ichneumon xanthorius genome assembly, chromosome: 12.
OU824211.1:6552804-6552823

GTCCACCGAGAACTTTGAGATGCAGGCCGA6552804TCTCGTTCAGGAGGTTCATCTCGATACGGCGCAGACGCAGACGACACCGA

Sequence 10128 from Patent WO2009037279.
GN105347.1:924-943

GAGCAAAGACGACGCTTTCAAGACTCATCC924GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 10132 from Patent WO2009037279.
GN105351.1:924-943

GAGCAAAGACGATGCTTTCAAGACTCATCC924GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 10128 from patent US 8664475.
HK291732.1:924-943

GAGCAAAGACGACGCTTTCAAGACTCATCC924GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 10132 from patent US 8664475.
HK291734.1:924-943

GAGCAAAGACGATGCTTTCAAGACTCATCC924GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2915 from patent US 9551006.
KH515485.1:967-986

GAGCAAAGACGACGCTTTCAAGACTCATCC967GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2916 from patent US 9551006.
KH515486.1:935-954

GAGCAAAGACGATGCCTTCAAGACTCATCC935GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2917 from patent US 9551006.
KH515487.1:967-986

GAGCAAAGACGATGCCTTCAAGACTCATCC967GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2918 from patent US 9551006.
KH515488.1:962-981

GAGCAAAGACGACGCTTTCAAGACTCATCC962GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2915 from patent US 10457952.
MO458661.1:967-986

GAGCAAAGACGACGCTTTCAAGACTCATCC967GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2916 from patent US 10457952.
MO458662.1:935-954

GAGCAAAGACGATGCCTTCAAGACTCATCC935GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2917 from patent US 10457952.
MO458663.1:967-986

GAGCAAAGACGATGCCTTCAAGACTCATCC967GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Sequence 2918 from patent US 10457952.
MO458664.1:962-981

GAGCAAAGACGACGCTTTCAAGACTCATCC962GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BN25.043A18F011128 BN25 Brassica napus cDNA clone BN25043A18, mRNA sequence.
CD821808.1:374-393

GAGCAAAGACGATGCTTTCAAGACTCATCC374GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

BN40.040E10F011020 BN40 Brassica napus cDNA clone BN40040E10, mRNA sequence.
CD828886.1:391-410

GAGCAAAGACGACGCTTTCAAGACTCATCC391GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

BN40.041A02F011207 BN40 Brassica napus cDNA clone BN40041A02, mRNA sequence.
CD829075.1:390-409

GAGCAAAGACGACGCTTTCAAGACTCATCC390GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

24RDBNH_UP_009_F11_19DEC2003_085 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN730558.1:292-311

GAGCAAAGACGACGCTTTCAAGACTCATCC292GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

24RDBNH_UP_011_D10_19DEC2003_074 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN730711.1:148-167

GAGCAAAGACGACGCTTTCAAGACTCATCC148GATGAACCTCCTGAACGAGAGGACACTCGAGGGTACTTTCTTTGGCAACT

EL3844R Brassica embryo library (EL) Brassica napus cDNA clone EL3844 5', mRNA sequence.
CN829972.1:173-192

GAGCAAAGACGACGCTTTCAAGACTCATCC173GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

RT1835 Chinese cabbage root library Brassica rapa subsp. pekinensis cDNA clone RT1835 5', mRNA sequence.
CV433275.1:270-289

GAGCAAAGACTATGCCTTCAAGACTCATCC270GATGAACCTCCTGAACGAGAGGACACTCAAGAGGTACTTTTTTTGGCAAC

RT2978 Chinese cabbage root library Brassica rapa subsp. pekinensis cDNA clone RT2978 5', mRNA sequence.
CV433955.1:73-92

GAGCAAAGACGATGCTTTCAAGACTCATCC73GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

SS3338.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS3338.txt 5', mRNA sequence.
CV547015.1:154-173

GAGCAAAGACGATGCCTTCAAGACTCATCC154GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

HC2674 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN192252.1:203-222

GAGCAAAGACGATGCCTTCAAGACTCATCC203GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

19ACACYS_UP_029_E12_29OCT2004_088 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY008745.1:272-291

GAGCAAAGACGACGCTTTCAAGACTCATCC272GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

15ACDHYS_UP_022_A04_21OCT2004_032 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE401729.1:228-247

GAGCAAAGACGACGCTTTCAAGACTCATCC228GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

35ETGS60_UP_009_E05_11FEB2005_039 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431902.1:150-169

GAGCAAAGACGACGCTTTCAAGACTCATCC150GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

4ETGS72H_UP_016_G10_14FEB2005_068 Brassica napus 4ETGS72h Brassica napus cDNA 5', mRNA sequence.
EE434219.1:184-203

GAGCAAAGACGACGCTTTCAAGACTCATCC184GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

5ETGS9H_UP_018_C07_05FEB2005_059 Brassica napus 5ETGS9h Brassica napus cDNA 5', mRNA sequence.
EE436700.1:120-139

GAGCAAAGACGACGCTTTCAAGACTCATCC120GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

76ETGS72_UP_002_H02_11MAY2005_002 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE449535.1:609-628

GAGCAAAGACGACGCTTTCAAGACTCATCC609GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

26RDBNT_UP_056_G02_10NOV2005_004 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
EE514877.1:207-226

GAGCAAAGACGACGCTTTCAAGACTCATCC207GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

46RDOAG_UP_042_D02_28DEC2004_010 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE533284.1:21-40

GATGCCTTCAAGACTCATCC21GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

61RDBNCM_UP_016_F05_12NOV2004_037 Brassica napus 61RDBNCM Brassica napus cDNA 5', mRNA sequence.
EE537342.1:184-203

GAGCAAAGACGACGCTTTCAAGACTCATCC184GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BNZB_UP_077_C05_02JUN2004_043 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE561980.1:591-610

GAGCAAAGACGACGCTTTCAAGACTCATCC591GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BNAEN1GH_UP_018_B06_30MAY2006_046 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES987492.1:114-133

GAGCAAAGACGACGCTTTCAAGACTCATCC114GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BNSCS3CT_UP_071_E07_05MAY2007_055 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV042160.1:561-580

GAGCAAAGACGACGCTTTCAAGACTCATCC561GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BNSCS3CT_UP_283_E01_01JUN2007_007 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV059347.1:86-105

GAGCAAAGACGACGCTTTCAGGACTCATCC86GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR017284 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-121G02 5', mRNA sequence.
EX032640.1:376-395

GAGCAAAGACGATGCCTTCAAGACTCATCC376GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR020036 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-171B01 5', mRNA sequence.
EX035392.1:436-455

GAGCAAAGACGATGCCTTCAAGACTCATCC436GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR047572 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-11H03 5', mRNA sequence.
EX062928.1:469-488

GAGCAAAGACGATGCCTTCAAGACTCATCC469GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR048827 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-43E12 5', mRNA sequence.
EX064183.1:45-64

GAGCAAAGACGATGCCTTCAAGACTCATCC45GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR058107 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-016A11 5', mRNA sequence.
EX073463.1:553-572

GAGCAAAGACGATGCCTTCAAGACTCATCC553GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR058507 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-021B04 5', mRNA sequence.
EX073863.1:553-572

GAGCAAAGACGATGCCTTCAAGACTCATCC553GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR060162 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-042B07 5', mRNA sequence.
EX075518.1:556-575

GAGCAAAGACGATGCCTTCAAGACTCATCC556GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR084875 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-006F11 5', mRNA sequence.
EX098585.1:328-347

GAGCAAAGACGATGCCTTCAAGACTCATCC328GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR085344 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-012H11 5', mRNA sequence.
EX099054.1:851-870

GAGCAAAGACGATGCCTTCAAGACTCATCC851GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGC

BR092462 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-058B09 5', mRNA sequence.
EX106172.1:430-449

GAGCAAAGACGATGCCTTCAAGACTCATCC430GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

BR103573 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-29F07 5', mRNA sequence.
EX119743.1:224-243

GAGCAAAGACGATGCCTTCAAGACTCATCC224GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:3395729-3395748

GAGCAAAGACGATGCCTTCAAGACTCATCC3395729GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica rapa subsp. pekinensis clone KBrB008O03, complete sequence.
FP102020.1:21177-21196

GAGCAAAGACGATGCCTTCAAGACTCATCC21177GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica oleracea Adh gene for alcohol dehydrogenase, partial cds.
AB015508.1:1172-1191

GAGCAAAGACGATGCCTTCAAGACTCATCC1172GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica napus cultivar Darmor ADH1 gene, ADH1-DN allele, partial cds.
AF056551.1:425-444

AAGCAAAGACGATGCTTTCAAAACTCATCC425GATGAACCTCCTGAACGAGAGGACGCTCAAGGGTACTTTCTTTGG

Brassica napus cultivar Darmor ADH2 gene, ADH2-DN allele, partial cds.
AF056552.1:417-436

AAGCAAAGACGACGCTTTCAAAACTCATCC417GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGG

Brassica rapa cultivar R500 ADH1 gene, ADH1-R500 allele, partial cds.
AF056556.1:385-404

AAGCAAAGACGATGCCTTCAAAACTCATCC385GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGG

Triticum urartu alcohol dehydrogenase ADH1 mRNA, complete cds.
EF122853.1:924-943

GCACAAGGACGCCGAATTCAAGACCCACCC924GATGAACCTCCTGAACGAGAGGACTCTCAAGGGCACCTTCTTCGGAAACT

Brassica napus genome assembly, chromosome: A07.
HG994361.1:28126864-28126883

GAGCAAAGACGACGCTTTCAAGACTCATCC28126864GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

Brassica napus genome assembly, chromosome: C06.
HG994370.1:48595233-48595252

GAGCAAAGACGATGCTTTCAAGACTCATCC48595233GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

Brassica rapa cultivar Hwang Bok alcohol dehydrogenase 1 (adh1) mRNA, complete cds.
JF682847.1:968-987

GAGCAAAGACGATGCCTTCAAGACTCATCC968GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica rapa genome, scaffold: A07.
LR031574.1:27104662-27104681

GAGCAAAGACGATGCCTTCAAGACTCATCC27104662GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:44871313-44871332

GAGCAAAGACGATGCCTTCAAGACTCATCC44871313GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGCAACT

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:27447608-27447627

GAGCAAAGACGATGCCTTCAAGACTCATCC27447608GATGAACCTCCTGAACGAGAGGACACTCAAGGGTACTTTCTTTGGGAACT

Alloplasta piceator genome assembly, chromosome: 1.
OX333071.1:8689252-8689271

GCCATTTTCCTTTTGACTCACTCGGTACCA8689252GATGAACCTCCTGAACGAGACATTAGTTGGCGAATCGATTAAACTACATC

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.880 | 0.872 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCGTTCAGGAGGTTCATC&k=0&no_gap=0&offset=0&limit=50
2.960 | 2.080 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAACCTCCTGAACGAGA&k=0&no_gap=0&offset=0&limit=34
3.001 | 0.040 | cgi_end;

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