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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:24:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

NDL1_7_C06.b1_A029 Needles control Pinus taeda cDNA clone NDL1_7_C06_A029 3', mRNA sequence.
CO169438.1:160-179
TCACTGCCCCCCCAATTTGACTATGCACAC160TCTCTGGTCTATTATGGTTGCTCCCTGTACGAAAATGCATTGCGTTAAAC
RTNACL1_38_D07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_38_D07_A029 3', mRNA sequence.
CV034030.1:394-413
ATCACTGCCCCCCCAATTGACTATGCACAC394TCTCTGGTCTATTATGGTTGCTCCGCTCAACAGAACAGCAGTTTCCACAG
STRS1_71_D10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_71_D10_A034 3', mRNA sequence.
DR025356.1:495-514
ATCACTGCCCCCCCAATTGACTATGCACAC495TCTCTGGTCTATTATGGTTGCTCCGCTCAACAGAACAGCAGTTTCCACAG
STRS1_71_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_71_D10_A034 5', mRNA sequence.
DR025445.1:753-772
ATCACTGCCCCCCCAATTGACTATGCACAC753TCTCTGGTCTATTATGGTTGCTC
STRR1_18_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_18_B06_A033 3', mRNA sequence.
DR094980.1:709-728
ATCACTGCCCCCCCAATTGACTATGCACAC709TCTCTGGTCTATTATGGTTGCTCCGCTCAACAGAACAGCAGTTTCCACAG
STRR1_18_B06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_18_B06_A033 5', mRNA sequence.
DR095053.1:773-792
ATCACTGCCCCCCCAATTGACTATGCACAC773TCTCTGGTCTATTATGGTTGCTCCGCTCAACAGAACAGCAGTTTCCACAG
2_Tcm_b3v08.
OE181756.1:49416-49435
TTCTATTTTGACCACTCCTCTATTATTCCC49416TCTCTGGTCTATTATGGTTGCCACTCAATTAGTTGACCTTGCAGTGGGGA
RTDR2_8_F04.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_8_F04_A021 5', mRNA sequence.
CF389621.1:319-338
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG319CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
RTCNT1_2_E04.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_2_E04_A029 5', mRNA sequence.
CF663413.1:183-202
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG183CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
FLD1_16_B02.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_16_B02_A029 5', mRNA sequence.
CO159858.1:370-389
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG370CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
RTNACL1_42_H06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_42_H06_A029 5', mRNA sequence.
CV035856.1:420-439
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG420CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
STRR1_39_A07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_39_A07_A033 5', mRNA sequence.
DR098150.1:324-343
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG324CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
RTHG1_15_G06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_15_G06_A029 5', mRNA sequence.
DR386530.1:123-142
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG123CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGCGGCAGTGAT
PCO0139.C21_H09 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0139_H09 5', mRNA sequence.
GT239901.1:338-357
CTGTGGAAACTGCTGTTCTGTTGAGCGGAG338CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
PCO024.C21_M12 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO024_M12 5', mRNA sequence.
GT260185.1:367-386
CTGTAGAAACTGCTGTTCTGTTGAGCGGAG367CAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGAT
2_Tsi_b3v08.
OC005254.1:6518-6537
TCCCCACTGCAAGGTCAACTAATCGAGTGG6518CAACCATAATAGACCAGAGAGGGAATAATAGAGGAGTGGTCAAAATAGAA
Gonocerus acuteangulatus genome assembly, chromosome: 7.
OX328129.1:2591628-2591647
TCTATTTACAGGGTGTCCATCGTTTCTAGA2591628CAACCATAATAGACCAGAGAATGTTTCCAGGGAGTTCATTGCTGAAAACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTCTGGTCTATTATGGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTCTGGTCTATTATGGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.499 | 0.490 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCTGGTCTATTATGGTTG&k=0&no_gap=0&offset=0&limit=50
1.027 | 0.528 | search_minus_done; http://172.18.8.135:50400/match?q=CAACCATAATAGACCAGAGA&k=0&no_gap=0&offset=0&limit=43
1.034 | 0.007 | cgi_end;

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