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2025-04-09 16:34:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Argentina silus genome assembly, chromosome: X.
OX637366.1:36297653-36297672

GTTGTCAAGGATCACCAAAATTCTTGGCTG36297653TCTGGGAGATTACAGTGGAGTTCTCTACTATGTAGAGTTCTCTACTGTGA

Sequence 17960 from patent US 7750207.
GX323885.1:553-572

GGCCGTGGAATGAGATGGAGTTCGGGTTTT553TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

EL2754F Brassica embryo library (EL) Brassica napus cDNA clone EL2754 3', mRNA sequence.
CN828212.1:493-512

GGCCGTGGAATGAGATGGAGTTCGGGTTTT493TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL1321F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1321, mRNA sequence.
EH414395.1:487-506

GGCCGTGGAATGAGATGGAGTTCGGGTTTT487TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL2423F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2423, mRNA sequence.
EH416596.1:463-482

GGCCGTGGAATGAGATGGAGTTCGGGTTTT463TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL283F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL283, mRNA sequence.
EH417441.1:477-496

GGCCGTGGAATGAGATGGAGTTCGGGTTTT477TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL3385F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3385, mRNA sequence.
EH418537.1:471-490

GGCCGTGGAATGAGATGGAGTTCGGGTTTT471TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL347F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL347, mRNA sequence.
EH418714.1:485-504

GGCCGTGGAATGAGATGGAGTTCGGGTTTT485TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL5077F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5077, mRNA sequence.
EH421650.1:549-568

GGCCGTGGAATGAGATGGAGTTCGGGTTTT549TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL5280F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5280, mRNA sequence.
EH422006.1:476-495

GGCCGTGGAATGAGATGGAGTTCGGGTTTT476TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL6698F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6698, mRNA sequence.
EH424785.1:504-523

GGCCGTGGAATGAGATGGAGTTCGGGTTTT504TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL6962F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6962, mRNA sequence.
EH425295.1:432-451

GGCCGTGGAATGAGATGGAGTTCGGGTTTT432TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL7571F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7571, mRNA sequence.
EH426336.1:478-497

GGCCGTGGAATGAGATGGAGTTCGGGTTTT478TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL8644F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8644, mRNA sequence.
EH428476.1:454-473

GGCCGTGGAATGAGATGGAGTTCGGGTTTT454TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

OL8847F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8847, mRNA sequence.
EH428878.1:465-484

GGCCGTGGAATGAGATGGAGTTCGGGTTTT465TCTGGGAGATTACAGTGGAGAAAATTAAGGGTGTGAGCAAAGCAGATGCG

OL8876F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8876, mRNA sequence.
EH428925.1:434-453

GGCCGTGGAATGAGATGGAGTTCGGGTTTT434TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0203413 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV137487.1:505-524

GGCCGTGGAATGAGATGGAGTTCGGGTTTT505TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0203903 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV137977.1:506-525

GGCCGTGGAATGAGATGGAGTTCGGGTTTT506TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0152135 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171443.1:644-663

GGCCGTGGAATGAGATGGAGTTCGGGTTTT644TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0152544 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180755.1:479-498

GGCCGTGGAATGAGATGGAGTTTGGGTTTT479TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAAAGCAGATGCG

0101688 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200535.1:558-577

GGCCGTGGAATGAGATGGAGTTCGGGTTTT558TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0102298 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV201145.1:538-557

GGCCGTGGAATGAGATGGAGTTCGGGTTTT538TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0171289 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204108.1:665-684

GGCCGTGGAATGAGATGGAGTTTGGGTTTT665TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAAAGCAGATGCC

0179909 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV209566.1:680-699

GGCCGTGGAATGAGATGGAGTTTGGGTTTT680TCTGGGAGATTACAGTGGAGAAAGTGTGGGTGTGAGCAAAGCAGATGCGC

0188488 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV215573.1:613-632

GGCCGTGGAATGAGATGGAGTTCGGGTTTT613TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

0188846 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV215735.1:610-629

GGCCGTGGAATGAGATGGAGTTCGGGTTTT610TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

1106514774259 Cryptosporidium muris (strain RN66) cDNA library, stage oocyst Cryptosporidium muris RN66 cDNA clone 1061039178421, mRNA sequence.
FD409958.1:515-534

GGCCGTGGAATGAGATGGAGTTCGGGTTTT515TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF04G14, 3'-end sequence.
FY069574.1:451-470

GGCCGTGGAATGAGATGGAGTTTGGGTTTT451TCTGGGAGATTACAGTGGAGAAAGTTGT

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF07K06, 3'-end sequence.
FY070692.1:473-492

GGCCGTGGAATGAGATGGAGTTTGGGTTTT473TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF07P15, 3'-end sequence.
FY070808.1:517-536

GGCCGTGGAATGAGATGGAGTTTGGGTTTT517TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF13F18, 3'-end sequence.
FY072727.1:462-481

GGCCGTGGAATGAGATGGAGTTTGGGTTTT462TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31L20, 3'-end sequence.
FY423407.1:450-469

GGCCGTGGAATGAGATGGAGTTTGGGTTTT450TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

0259263 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO946914.1:576-595

GGCCGTGGAATGAGATGGAGTTTGGGTTTT576TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

0268696 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO961834.1:531-550

GGCCGTGGAATGAGATGGAGTTTGGGTTTT531TCTGGGAGATTACAGTGGAGCGGACGCGTGGGTCGACCCGGGAATTCCGG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189531.2:69115-69134

GGCCGTGGAATGAGATGGAGTTTGGGTTTT69115TCTGGGAGATTACAGTGGAGAAAGTTGTGGGTGTGAGCAGAGCAGATGCG

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:26910684-26910703

GGCCGTGGAATGAGATGGAGTTCGGGTTTT26910684TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

Brassica napus genome assembly, chromosome: C06.
HG994370.1:20604129-20604148

GGCCGTGGAATGAGATGGAGTTCGGGTTTT20604129TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:17591752-17591771

GGCCGTGGAATGAGATGGAGTTCGGGTTTT17591752TCTGGGAGATTACAGTGGAGAAAGTTGAGGGTGTGAGCAAAGCAGATGCG

Haemonchus contortus strain NZ_Hco_NP chromosome 2.
CP035801.1:5091696-5091715

TACCCGTTTTTCATTCTCAGTGACCCCTCA5091696TCTGGGAGATTACAGTGGAGGCGGAGTCTTATATCCGATATCCTATGTAT

BN20.051P24F011221 BN20 Brassica napus cDNA clone BN20051P24, mRNA sequence.
CD820307.1:105-124

CGCATCTGCTTTGCTCACACCCACAACTTT105CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

11FGYSDB_UP_002_C10_16OCT2003_076 Brassica seedling 11FGYSDB Brassica napus cDNA 5', mRNA sequence.
CN729239.1:72-91

CGCATCTGCTTTGCTCACACCCTCAACTTT72CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

EL2754R Brassica embryo library (EL) Brassica napus cDNA clone EL2754 5', mRNA sequence.
CN828213.1:98-117

CGCATCTGCTTTGCTCACACCCTCAACTTT98CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

Brassica rapa subsp. pekinensis mRNA, clone: BRest02-O09, 5'-end sequence.
DC844546.1:56-75

CGCATCTGCTCTGCTCACACCCACAACTTT56CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Brassica oleracea var. viridis mRNA, clone: KALE-090J22, 5' end sequence.
DK490203.1:75-94

CGCATCTGCTTTGCTCACACCCTCAACTTT75CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

Brassica oleracea var. viridis mRNA, clone: KALE-106P08, 5' end sequence.
DK496457.1:73-92

CGCATCTGCTTTGCTCACACCCTCAACTTT73CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

Brassica oleracea var. viridis mRNA, clone: KALE-090J22, 3' end sequence.
DK549784.1:75-94

CGCATCTGCTTTGCTCACACCCTCAACTTT75CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

Brassica oleracea var. viridis mRNA, clone: KALE-106P08, 3' end sequence.
DK556035.1:73-92

CGCATCTGCTTTGCTCACACCCTCAACTTT73CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

BNDH2DCT_UP_001_F11_09JUN2004_085 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW997137.1:109-128

CGCATCTGCTTTGCTCACACCCTCAACTTT109CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

34ETGS48_UP_014_A08_11FEB2005_064 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE430252.1:105-124

CGCATCTGCTTTGCTCACACCCACAACTTT105CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

BNBS6DCT_UP_016_H12_13APR2005_082 Brassica napus seeds BNBS6DCT Brassica napus cDNA 5', mRNA sequence.
EE457104.1:65-84

CGCATCTGCTTTGCTCACACCCTCAACTTT65CTCCACTGTAATCTCCCAGAAAAACCCGAACTCCATCTCATTCCACGGCC

KBrB003C02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB003C02, genomic survey sequence.
DX012278.1:439-458

CGCATCTGCTCTGCTCACACCCACAACTTT439CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

KBrB057G16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB057G16, genomic survey sequence.
DX053500.1:428-447

CGCATCTGCTCTGCTCACACCCACAACTTT428CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9454376-9454395

CGCATCTGCTCTGCTCACACCCACAACTTT9454376CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Brassica napus genome assembly, chromosome: A05.
HG994359.1:9456414-9456433

CGCATCTGCTTTGCTCACACCCACAACTTT9456414CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Brassica rapa genome, scaffold: A05.
LR031570.1:15229238-15229257

CGCATCTGCTTTGCTCACACCCACAACTTT15229238CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Brassica rapa genome assembly, chromosome: A05.
LS974621.2:9338720-9338739

CGCATCTGCTTTGCTCACACCCACAACTTT9338720CTCCACTGTAATCTCCCAGAAAAACCCAAACTCCATCTCATTCCACGGCC

Metalampra italica genome assembly, chromosome: 5.
OX452974.1:5936796-5936815

ACTTATCTCTCCATGTAAGACCCCAAACGA5936796CTCCACTGTAATCTCCCAGACATTTAATTTCATCGTTTTAAATGAATCTT

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Debug Info:

0.009 | 0.009 | search_start;
1.803 | 1.795 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGGGAGATTACAGTGGAG&k=0&no_gap=0&offset=0&limit=50
2.265 | 0.462 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCACTGTAATCTCCCAGA&k=0&no_gap=0&offset=0&limit=11
2.277 | 0.012 | cgi_end;

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