GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:40:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2BE18TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726418.1:223-244
GTTATACGGTTTGTCTACACTTGTTGTTAT223TCTGGTATTGTCGGTGACTTCGACAGTGACATCCAAGGACGAGGTTGTTTCC
RS1CK87TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889775.1:121-142
GTTATACGGTTTGTCTACACTTGTTGTTAT121TCTGGTATTGTCGGTGACTTCGACAGTGACATCCAAGGACGAGGTTGTTTCC
RS2C294TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896147.1:138-159
GTTATACGGTTTGTCTACACTTGTTGTTAT138TCTGGTATTGTCGGTGACTTCGACAGTGACATCCAAGGACGAGGTTGTTTCC
RS2BE18JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730583.1:646-667
GGAAACAACCTCGTCCTTGGATGTCACTGT646CGAAGTCACCGACAATACCAGAATAACAACAAGTGTAGACAAACCGTATAAC
RS1CK87JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893440.1:668-689
GGAAACAACCTCGTCCTTGGATGTCACTGT668CGAAGTCACCGACAATACCAGAATAACAACAAGTGTAGACAAACCGTATAAC
RS2C294JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900117.1:663-684
GGAAACAACCTCGTCCTTGGATGTCACTGT663CGAAGTCACCGACAATACCAGAATAACAACAAGTGTAGACAAACCGTATAAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_4354.
FX668726.1:591-612
GGAAACAACCTCGTCCTTGGATGTCACTGT591CGAAGTCACCGACAATACCAGAATAACAACAAGTGTAGACAAACCGTATAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24804.
FX766552.1:1057-1078
GGAAACAACCTCGTCCTTGGATGTCACTGT1057CGAAGTCACCGACAATACCAGAATAACAACAAGTGTAGACAAACCGTATAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTGGTATTGTCGGTGACTTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTGGTATTGTCGGTGACTTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGGTATTGTCGGTGACTTCG&k=0&no_gap=0&offset=0&limit=50
0.619 | 0.275 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAGTCACCGACAATACCAGA&k=0&no_gap=0&offset=0&limit=47
0.622 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).