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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCL08F24, 5' end sequence.
FY435646.1:137-156
AGCTCCTCTTCTTCTTCTTCTTCTATCAGA137TCTGGTGCCACTGTCTATCGCAGGATTTACATTTACAAAGAGGAAGGAGG
Raphanus sativus mRNA, clone: RSCS16H19, 5' end sequence.
FY451606.1:175-194
AGCTCCTCTTCTTCTTCTTCTTCTATCAGA175TCTGGTGCCACTGTCTATCGCAGGATTTACATTTACAAAGAGGAAGGAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1852.
FX791730.1:241-260
AGCTCCTCTTCTTCTTCTTCTTCTATCAGA241TCTGGTGCCACTGTCTATCGCAGGATTTACATTTACAAAGAGGAAGGAGG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:14121621-14121640
TCCTCTTCTTCTTCTTCTTCTTCTATCAGA14121621TCTGGTGCCACTGTCTATCGCAGGTACGATTCCTCTTTGTTCACGATTCG
TSA: Raphanus sativus RS20515 mRNA sequence.
JT805062.1:1617-1636
CCTCCTTCCTCTTTGTAAATGTAAATCCTG1617CGATAGACAGTGGCACCAGATCTGATAGAAGAAGAAGAAGAAGAGGAGCT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:29496515-29496534
CGAATCGTGAACAAAGAGGAATCGTACCTG29496515CGATAGACAGTGGCACCAGATCTGATAGAAGAAGAAGAAGAAGAAGAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTGGTGCCACTGTCTATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTGGTGCCACTGTCTATCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.619 | 0.611 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGGTGCCACTGTCTATCG&k=0&no_gap=0&offset=0&limit=50
0.740 | 0.121 | search_minus_done; http://172.18.8.135:50400/match?q=CGATAGACAGTGGCACCAGA&k=0&no_gap=0&offset=0&limit=46
0.742 | 0.002 | cgi_end;

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