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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:34:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0163O04, *** SEQUENCING IN PROGRESS ***.
AC210358.1:64846-64869
CAATTAAAAAAAATCAACAATATTAGGAAC64846TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH091F11, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC238165.1:20233-20256
ATGCAATTGAAAATCAACCATGTTAGGAAC20233TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH196E12, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC238398.1:49544-49567
ATGCAATTGAAAATCAACCATGTTAGGAAT49544TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:260929013-260929036
ATGCAACTGAAAGTTAACCATATTAGGAAC260929013TCTTAATCAATCATTCACACAGCATATTTTTTGTCGACCAATTTGCCAGTGCCT
Solanum tuberosum cultivar P8 chromosome 12.
CP046681.1:3476751-3476774
ATGCAATTGAAAATCAACCATGTTAGGAAY3476751TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Solanum tuberosum cultivar MSH/14-112 chromosome 12.
CP046697.1:3476791-3476814
ATGCAATTGAAAATCAACCATGTTAGGAAC3476791TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Solanum pinnatisectum cultivar CGN17745 chromosome 12.
CP047558.1:3473580-3473603
ATGCAATTGAAAATCAACCATGTTAGGAAC3473580TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
Solanum tuberosum cultivar Solyntus chromosome 12.
CP055245.1:3661842-3661865
ATGCAATTGAAAATCAACCATGTTAGGAAC3661842TCTTAATCAATCATTCACACAGCATAAATATTTTTGTCAACCAGTTTGCATATG
159841 Tomato HindIII BAC Library Solanum lycopersicum genomic clone LE_HBa0044L15 5, genomic survey sequence.
DU043322.1:631-654
CATATGCAAACTGGTTGACAAAAATATTTA631TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
352464 Tomato EcoRI BAC Library Solanum lycopersicum genomic clone SL_EcoRI0132B11 3, genomic survey sequence.
DU928100.1:800-823
GCATATGCAAACTGGTTGACAAAATATTTA800TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATGTTGATTTTTTTTATTGCA
Solanum lycopersicum DNA, clone: MTBAC058P10_SP6.
FT262746.1:403-426
CATATGCAAACTGGTTGACAAAAATATTTA403TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Solanum lycopersicum DNA, clone: MTBAC060C04_T7.
FT263541.1:579-602
CATATGCAAACTGGTTGACAAAAATATTTA579TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Solanum lycopersicum DNA, clone: MTBAC079G03_T7.
FT275137.1:579-602
CATATGCAAACTGGTTGACAAAAATATTTA579TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH071N14, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC238104.1:85088-85111
CATATGCAAACTGGTTGACAAAAATATTTA85088TGCTGTGTGAATGATTGATTAAGAGTTCCTAACATGGTTGATTTTCAATTGCAT
Solanum lycopersicum Micro-Tom DNA, chromosome 12, draft genome sequence.
AP028946.1:2771603-2771626
CATATGCAAACTGGTTGACAAAAATATTTA2771603TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Solanum lycopersicum cultivar I-3 chromosome 12.
CP023768.1:2354655-2354678
CATATGCAAACTGGTTGACAAAAATATTTA2354655TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 4.
CP124716.1:160561539-160561562
ATATGCAAATTGGTCGACAAAAAATATTTA160561539TGCTGTGTGAATGATTGATTAAGAGTTCCTATCATGGTTTAGTTTCAATTGCAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:5623845-5623868
AGGCACTGGCAAATTGGTCGACAAAAAATA5623845TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATGGTTAACTTTCAGTTGCAT
Solanum verrucosum cultivar 11H23 chromosome 12.
CP133623.1:52626258-52626281
CATATGCAAACTGGTTGACAAAAATATTTA52626258TGCTGTGTGAATGATTGATTAAGAGTTCCTAACATGGTTGATTTTCAATTGCAT
Solanum pennellii chromosome ch12, complete genome.
HG975451.1:2621676-2621699
CATATGCAAACTGGTTGACAAAAATATTTA2621676TGCTGTGTGAATGATTGATTAAGAGTTCCTAACATTGTTGATTTTTTTAAATTG
Solanum lycopersicum chromosome ch12, complete genome.
HG975524.1:2354688-2354711
CATATGCAAACTGGTTGACAAAAATATTTA2354688TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG
Solanum lycopersicum genome assembly, chromosome: 12.
OU640355.1:2713979-2714002
CATATGCAAACTGGTTGACAAAAATATTTA2713979TGCTGTGTGAATGATTGATTAAGAGTTCCTAATATTGTTGATTTTTTTTAATTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTTAATCAATCATTCACACAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTAATCAATCATTCACACAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.267 | 0.258 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTAATCAATCATTCACACAGCA&k=0&no_gap=0&offset=0&limit=50
0.513 | 0.246 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGTGTGAATGATTGATTAAGA&k=0&no_gap=0&offset=0&limit=42
0.522 | 0.009 | cgi_end;

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