GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 19:12:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bos mutus isolate yakQH1 chromosome 25.
CP027093.1:31413340-31413359
TAACTGCCATGCTGTGGATGCAGAGGAACC31413340TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos taurus genome assembly, chromosome: 25.
LR962756.1:31262306-31262325
TAACTGCTATGCTGTGGATGCAGAGGAACC31262306TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos gaurus x Bos taurus genome assembly, chromosome: 25.
OX258979.1:32008456-32008475
TAACTGCTATGCTGTGGATGCAGAGGAACC32008456TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos taurus strain mammals genome assembly, chromosome: 25.
OX344714.1:31748208-31748227
TAACTGCTATGCTGTGGATGCAGAGGAACC31748208TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos taurus genome assembly, chromosome: Bta25.
OY997253.1:34744681-34744700
TAACTGCTATGCTGTGGATGCAGAGGAACC34744681TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 7468248.
GP093196.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 7511127.
GP380021.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 7709206.
GX213898.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 8026064.
GY399928.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from Patent WO2009089296.
HB521111.1:725-744
TAACTGCTATGCTGTGGATGCAGAGGAACC725TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 8450064.
HJ138475.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 8669056.
HJ757169.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 9206478.
HL406766.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 9410202.
KH083421.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 9982311.
MI771944.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 10190167.
MM638279.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Sequence 26753 from patent US 11053547.
MX954277.1:724-743
TAACTGCTATGCTGTGGATGCAGAGGAACC724TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos taurus clone CH240-268N14, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC185043.2:62989-63008
TAACTGCTATGCTGTGGATGCAGAGGAACC62989TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Bos taurus clone CH240-497I9, WORKING DRAFT SEQUENCE, 25 unordered pieces.
AC230843.1:176345-176364
TAACTGCTATGCTGTGGATGCAGAGGAACC176345TCTTAGCCCTCTCCTGTCCACTTATTCTTGCTCTGACCACCATGCTGCTG
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:39589345-39589364
AAAGTCAACCAAACACAAACACACACACCT39589345TCTTAGCCCTCTCCTGTCCAATTACAAATTTATCAAGCCCTTTACAAATT
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:43607307-43607326
AGTCAACCACACACAAACACACACACACCT43607307TCTTAGCCCTCTCCTGTCCAATTACATATTTATCAAGCCCTTTACAAATT
Trifolium dubium genome assembly, chromosome: 3.
OX638064.1:20365583-20365602
AAACACAAACACAAACACAATCACACACCT20365583TCTTAGCCCTCTCCTGTCCAATTACAAATTTATCAAGGCCTTTACAAATC
Capricornis sumatraensis isolate serow.1 chromosome 3.
CP135628.1:10999639-10999658
CAGCAGCATGGTGGTCAGAGCAAGAATAAG10999639TGGACAGGAGAGGGCTAAGAGGTTCCTCTGCGTCCACAGCATAGCAGTTA
Bos taurus genome assembly, chromosome: 25.
LR962881.1:11129975-11129994
CAGCAGCATGGTGGTCAGAGCAAGAATAAG11129975TGGACAGGAGAGGGCTAAGAGGTTCCTCTGCATCCACAGCATGGCAGTTA
Trifolium repens mRNA, clone: WCC33f15_036, unspecified EST.
FY465703.1:442-461
AATTTGTAAAGGGCTTGATAAATTTATAAT442TGGACAGGAGAGGGCTAAGAAGGTGCTTTCTGTGGCAGTTTATAATCACT
Bos taurus clone RP42-197D16, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC185677.1:175457-175476
CAGCAGCATGGTGGTCAGAGCAAGAATAAG175457TGGACAGGAGAGGGCTAAGAGGTTCCTCTGCATCCACAGCATAGCAGTTA
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:18202744-18202763
AATTTGTAAAGGGCTTGATAAATTTGTAAT18202744TGGACAGGAGAGGGCTAAGAAGGTTTGTGTTTGTGTGTGGTTGACTTTTT
Trifolium dubium genome assembly, chromosome: 15.
OX638076.1:8882481-8882500
GATTTGTAAAGGGCTTGATAAATTTGTAAT8882481TGGACAGGAGAGGGCTAAGAAGGTGTGTGTGTTTGTGTTTGACTCTTTTT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:52909071-52909090
AATTTGTAAAGGGCTTGATAAATTTGTAAT52909071TGGACAGGAGAGGGCTAAGAAGGTGTGTGCTTTTGTGTGGTTGACTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTAGCCCTCTCCTGTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTAGCCCTCTCCTGTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.455 | 0.446 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTAGCCCTCTCCTGTCCA&k=0&no_gap=0&offset=0&limit=50
0.569 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=TGGACAGGAGAGGGCTAAGA&k=0&no_gap=0&offset=0&limit=28
0.573 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).