GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:59:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sarcophilus harrisii genome assembly, chromosome: 5.
LR735558.1:234581927-234581946
AAGGGTACTTTTGCCCCATATTACCCACAT234581927TCTTCAGTGAGTTCCAACGATTCCCTCCTTATAACTTCTAGGATCATTTA
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94238510-94238529
ACCATGCCGATCTCCATGCTTTGAATGATT94238510TCTTCAGTGAGTTCCAACGATACTTTGTCTTCTCTCTCGGATTGCGGCCC
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:138974738-138974757
ACCATGCCGATCTCCATGCTTTGAATGATT138974738TCTTCAGTGAGTTCCAACGATACTTTGTCTTCTCTCTCGGATTGCGGGCC
GA__Eb0039I16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039I16f, mRNA sequence.
BG446845.1:181-200
GGGCCGCAATCCGAGAGAGAAGACAAAGTA181TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
GA__Ed0080G10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0080G10f, mRNA sequence.
BQ405276.1:179-198
GGGCCGCAATCCGAGAGAGAAGACAAAGTA179TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
CM039F01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR455946.1:166-185
GGGCCGCAATCCGAGAGAGAAGACAAAGTA166TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
EST1067113 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT556473.1:149-168
GGGCCGCAATCCGAGAGAGAAGACAAAGTA149TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
EST010071 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 45-O15 5', mRNA sequence.
GR716871.1:173-192
GGGCCGCAATCCGAGAGAGAAGACAAAGTA173TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
ndcxd0_0028_H01.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379022.1:182-201
GGGCCGCAATCCGAGAGAGAAGACAAAGTA182TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
ndcxd0_0033_E08.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379403.1:181-200
GGGCCGCAATCCGAGAGAGAAGACAAAGTA181TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
Gossypioides kirkii chromosome KI_06.
CP032248.1:40161680-40161699
GGGCCGCAATCCGAGAGAGAAGACAAAGTA40161680TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:620309-620328
GGGCCGCAATCCGAGAGAGAAGACAAAGTA620309TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:580768-580787
GGGCCGCAATCCGAGAGAGAAGACAAAGTA580768TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:622688-622707
GGGCCGCAATCCGAGAGAGAAGACAAAGTA622688TCGTTGGAACTCACTGAAGAAATCATTCAAAGCATGGAGATCGGCATGGT
Cyclophora punctaria genome assembly, chromosome: 4.
OX596171.1:1312801-1312820
GTATTTAACCACATCACGCTCAAATTGATA1312801TCGTTGGAACTCACTGAAGAGAGATGCCTGCAAAATTGGCGCTGTTTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCAGTGAGTTCCAACGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCAGTGAGTTCCAACGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.152 | 0.144 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCAGTGAGTTCCAACGA&k=0&no_gap=0&offset=0&limit=50
0.757 | 0.605 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTTGGAACTCACTGAAGA&k=0&no_gap=0&offset=0&limit=47
0.765 | 0.008 | cgi_end;

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