GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 16:02:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Medicago sativa cultivar Chilean F0D_3407 mRNA sequence.
JL869860.1:33-58
TAGACCGACTTCTTCTGGGGTTAACGGACA33TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTATGTAGTGTCTTCCATCTCC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:57525528-57525553
TAGACCAACTTCTTCTGGGGTTAACGGGCA57525528TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCATATCAATATACCTTA
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:59854337-59854362
TAGACCAACTTCTTCTGGGGTTAACGGGCA59854337TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCATATCAATATACCTTA
Medicago arabica genome assembly, chromosome: 4.
OX326967.1:63019845-63019870
TAGACCAACTTCTTCTGGGGTTAACGGACA63019845TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCATATCAATATACTTCA
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:43748472-43748497
TAGACCAACTTCTTCTGGGGTTAATGGGCA43748472TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCATATCAATATACTTAT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:57418421-57418446
TAGACCAACTTCTTCTGGGGTTAACGGGCA57418421TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCATATCAATATACCTTA
Astragalus glycyphyllos genome assembly, chromosome: 1.
OY754307.1:96089622-96089647
TAGACCAACTTCTTCTGGGGTTAATGGGCA96089622TCTTCCCTGCCTCCTGGCCCTATCAGGATTGCTTTTCTGCACATCAATATTCCTCA
N100123e rootphos(-) Medicago truncatula cDNA clone MHRP-2C7, mRNA sequence.
AW125928.2:16-41
GCACGAGAAGCAATC16CTGATAGGGCCAGGAGGCAGGGAAGATGTCCGTTAACCCCAGAAGAAGTCGGTCTA
EST648132 KV3 Medicago truncatula cDNA clone KV3-49I12, mRNA sequence.
CB891163.1:489-514
GGAGATGGAAGACACTACATAAAAGCAATC489CTGATAGGGCCAGGAGGCAGGGAAGATGTCCGTTAACCCCAGAAGAAGTCGGTCTA
EST1224293 MTY Medicago truncatula cDNA clone MTYA375, mRNA sequence.
DW015332.1:570-595
GGAGATGGAAGACACTACATAAAAGCAATC570CTGATAGGGCCAGGAGGCAGGGAAGATGTCCGTTAACCCCAGAAGAAGTCGGTCTA
TSA: Medicago truncatula Contig3701.Metrroot mRNA sequence.
JR372002.1:552-577
GGAGATGGAAGACACTACATAAAAGCAATC552CTGATAGGGCCAGGAGGCAGGGAAGATGTCCGTTAACCCCAGAAGAAGTCGGTCTA
UNVERIFIED: Poincianella palmeri AIGP gene, partial sequence.
KF378839.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
UNVERIFIED: Caesalpinia madagascariensis AIGP gene, partial sequence.
KF378841.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGCCTC
UNVERIFIED: Libidibia paraguariensis AIGP gene, partial sequence.
KF378842.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTCGGTCTC
UNVERIFIED: Tara spinosa AIGP gene, partial sequence.
KF378843.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGCCTC
UNVERIFIED: Mezoneuron scortechinii AIGP gene, partial sequence.
KF378845.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
UNVERIFIED: Delonix floribunda AIGP gene, partial sequence.
KF378850.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
UNVERIFIED: Delonix regia AIGP gene, partial sequence.
KF378851.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
UNVERIFIED: Delonix velutina AIGP gene, partial sequence.
KF378852.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
UNVERIFIED: Delonix boiviniana AIGP gene, partial sequence.
KF378853.1:1-26
1CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTC
Trifolium dubium genome assembly, chromosome: 15.
OX638076.1:778981-779006
TAAGATATATTGATATGCAGAAAAGCAATC778981CTGATAGGGCCAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTA
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:1340891-1340916
TGAGGTATATTGATACGCAGAAAAGCAATC1340891CTGATAGGGCCAGGAGGCAGGGAAGATGTCCGTTAACCCCAGAAGAAGTTGGTCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCCCTGCCTCCTGGCCCTATCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCCCTGCCTCCTGGCCCTATCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCCCTGCCTCCTGGCCCTATCAG&k=0&no_gap=0&offset=0&limit=50
0.286 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=CTGATAGGGCCAGGAGGCAGGGAAGA&k=0&no_gap=0&offset=0&limit=43
0.296 | 0.010 | cgi_end;

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