GGGenome | Results

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2025-04-05 17:37:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Manihot esculenta mRNA, clone: CAS01_004_L17, 3'end.
DB940021.1:332-358

TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGCCATCTT

Manihot esculenta mRNA, clone: CAS01_024_M20, 3'end.
DB946436.1:332-358

TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT

Manihot esculenta mRNA, clone: CAS01_032_K23, 3'end.
DB948942.1:330-356

TGCTGCGCTCCACACGATGCCAAGTATCAT330TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT

Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:31898887-31898913

TACTGCGCTCCACTCTATGCCACTTGTCGT31898887TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT

Quercus variabilis isolate HB chromosome 1b.
CP129433.1:29822780-29822806

TACTGCGCTCCACTCTATGCCACTTGTCGT29822780TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT

Quercus variabilis isolate HB chromosome 1a.
CP129445.1:31198641-31198667

TACTGCGCTCCACTCTATGCCACTTGTCGT31198641TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT

Quercus robur genome assembly, chromosome: 1.
OW028765.1:28634895-28634921

TACTGCGCTCCACTCTATGCCACTTGTCGT28634895TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT

Quercus cerris genome assembly, chromosome: 6.
OY770011.1:30583035-30583061

TACTGCGCTCCACTCTATGCCACTTGTCGT30583035TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACCCTGTCATCTT

Sequence 1070 from patent US 8937215.
HK371708.1:352-378

AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1072 from patent US 8937215.
HK371710.1:434-460

AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1070 from patent US 9574200.
KH564262.1:352-378

AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1072 from patent US 9574200.
KH564264.1:434-460

AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1070 from patent US 10227607.
MM771261.1:352-378

AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1072 from patent US 10227607.
MM771263.1:434-460

AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1070 from patent US 10883115.
MX197427.1:352-378

AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1072 from patent US 10883115.
MX197429.1:434-460

AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1070 from patent US 11530418.
OO985938.1:352-378

AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Sequence 1072 from patent US 11530418.
OO985940.1:434-460

AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Manihot esculenta mRNA, clone: CAS01_004_L17, 5'end.
DB921378.1:353-379

AAGATGGCAGAGTGCTCCAAATCAGCGGAG353AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Manihot esculenta mRNA, clone: CAS01_024_M20, 5'end.
DB928617.1:350-376

AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Manihot esculenta mRNA, clone: CAS01_032_K23, 5'end.
DB931493.1:350-376

AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

CV01007B1A09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01007B1A09.f1, mRNA sequence.
DV442573.1:324-350

AAGATGACAGAGTGCTCCAAATCAGCGGAG324AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

CV02003B1A04.f1 CV02-normalized library Manihot esculenta cDNA clone CV02003B1A04.f1, mRNA sequence.
DV450142.1:297-323

AAGATGACAGAGTGCTCCAAATCAGCGGAG297AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

U_SX-PL011N01_A_plate34o22.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG983733.1:361-387

AAGATGACAGAGTGCTCCAAATCAGCGGAG361AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGAAGCA

U_UZ-100602_plate11e17.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991072.1:367-393

AAGATGACAGAGTGCTCCAAATCAGCGGAG367AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

U_UZ-100602_plate11o18.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991282.1:366-392

AAGATGACAGAGTGCTCCAAATCAGCGGAG366AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

U_UZ-100602_plate37p06.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG999532.1:311-337

AAGATGACAGAGTGCTCCAAATCAGCGGAG311AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA

Data Export:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCTCTTCCTTCTCCACATTCCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCTCTTCCTTCTCCACATTCCTCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.254 | 0.245 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCTCTTCCTTCTCCACATTCCTCT&k=0&no_gap=0&offset=0&limit=50
1.581 | 1.327 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGGAATGTGGAGAAGGAAGAGAAGA&k=0&no_gap=0&offset=0&limit=42
1.593 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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