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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 09:32:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH023_05323m, 5' end sequence.
AB450706.1:3-25
CT3TCTTCTTCACAGGTCACAACAGCTGAACTGGAACTCTCTTCTCTAAAAACCCT
010501AASA009467HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA009467, mRNA sequence.
CN881591.1:19-41
AATTCGGACGAGGCTTCT19TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001099HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001099, mRNA sequence.
CN904130.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001127HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001127, mRNA sequence.
CN904149.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001239HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001239, mRNA sequence.
CN904201.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001463HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001463, mRNA sequence.
CN904323.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001581HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001581, mRNA sequence.
CN904387.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010831ABDA001654HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001654, mRNA sequence.
CN904425.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010928ABDA003106HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA003106, mRNA sequence.
CN905186.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010928ABDA003123HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA003123, mRNA sequence.
CN905195.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010929ABDA004532HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA004532, mRNA sequence.
CN905761.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010929ABDA004696HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA004696, mRNA sequence.
CN905794.1:10-32
CCAACTTGT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010929ABDA004739HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA004739, mRNA sequence.
CN905812.1:10-32
CCAACTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010914AVBC013084PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013084, mRNA sequence.
CN941038.1:1-23
1TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
010917AVBC042048PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC042048, mRNA sequence.
CN941940.1:10-32
CCTTCTTCT10TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Mdfwb2098K07.g2 Apple_EST_Mdfwb Malus domestica cDNA 5' similar to emb|CAB76908.1| putative Ruv DNA-helicase [Cicer arietinum], mRNA sequence.
GO508559.1:22-44
CGAATTCCGTTGCTGTCGTCT22TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Pyrus pyrifolia mRNA, clone: NFR3_27_69, 5' end sequence, expressed in fruit.
HX753489.1:59-81
CTCGTGTCCGATTACACAGGGCCAACTTCT59TCTTCTTCACAGGTCACAACAGCTGAACTGGAACTCTCTTCTCTAAAAACCCT
Pyrus pyrifolia mRNA, clone: NLE2_11_23, 5' end sequence, expressed in leaf.
HX767565.1:3-25
CT3TCTTCTTCACAGGTCACAACAGCTGAACTGGAACTCTCTTCTCTAAAAACCCT
Pyrus pyrifolia mRNA, clone: NLE2_11_75, 5' end sequence, expressed in leaf.
HX767615.1:3-25
CT3TCTTCTTCACAGGTCACAACAGCTGAACTGGAACTCTCTTCTCTAAAAACCCT
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:16985367-16985389
CTCGTGTCCGATTACGCAGGGCCAACTTCT16985367TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:15795064-15795086
CTCGTGTCCGATTACGCAGGGCCAACTTCT15795064TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:15090216-15090238
GTCGTGTCCGATTACGCAGGGCCAACTTCT15090216TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:16581271-16581293
CTCGTGTCCGATTACGCAGGGCCAACTTCT16581271TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus domestica genome assembly, chromosome: 3.
OU696679.1:16312209-16312231
CTCGTGTCCGATTACGCAGGGCCAACTTCT16312209TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus domestica genome assembly, chromosome: 3.
OU744544.1:16686895-16686917
CTCGTGTCCGATTACGCAGGGCCAACTTCT16686895TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus domestica genome assembly, chromosome: 3.
OU744955.1:16096769-16096791
CTCGTGTCCGATTACGCAGGGCCAACTTCT16096769TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Malus domestica genome assembly, chromosome: 3.
OU744993.1:16741523-16741545
CTCGTGTCCGATTACGCAGGGCCAACTTCT16741523TCTTCTTCACAGGTCACAACAGCTGTACTGGAACTCTCTTCTCTAAAAACCCT
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:12357903-12357925
CTCGTGTCCGATTACACAGGGCCAACTTCT12357903TCTTCTTCACAGGTCACAACAGCTGAACTGGAACTCTCTTCTCTAAAAACCCT
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:21563365-21563387
AGGGTTTTTAGAGAAGAGAGTTCCAGAACA21563365GCTGTTGTGACCTGTGAAGAAGAAGAAGTTGGCCCTGTGTAATCGGACACGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCTTCACAGGTCACAACAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCTTCACAGGTCACAACAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.277 | 1.268 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCTTCACAGGTCACAACAGC&k=0&no_gap=0&offset=0&limit=50
1.309 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGTTGTGACCTGTGAAGAAGA&k=0&no_gap=0&offset=0&limit=22
1.310 | 0.001 | cgi_end;

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