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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:10:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:1295384-1295403
TAGTGTGCAGTGACAGATTCAGAATTCGAA1295384TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAGATAAAAATAGA
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:1218246-1218265
TAGTGTGCAGTGACAGATTCAGAATTCGAA1218246TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAGATAAAAATAGA
Malus domestica genome assembly, chromosome: 9.
OU696685.1:1217239-1217258
TAGTGTGCAGTGACAGATTCAGAATTCGAA1217239TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAGATAAAAATAGA
Malus domestica genome assembly, chromosome: 9.
OU744550.1:1235612-1235631
TAGTGTGCAGTGACAGATTCAGAATTCGAA1235612TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAAATAAAAATAGA
Malus domestica genome assembly, chromosome: 9.
OU744961.1:1204016-1204035
TAGTGTGCAGTGACAGATTCAGAATTCGAA1204016TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAGATAAAAATAGA
Malus domestica genome assembly, chromosome: 9.
OU744999.1:1163291-1163310
TAGTGTGCAGTGACAGATTCAGAATTCGAA1163291TCTTGAAGGGTCTCAATGTTAAAGGTTTAAGTTTTTCAAATAAAAATAGA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5378163-5378182
ATCCAATCAGTGGCGAATTCAAGATTCAAA5378163TCTTGAAGGGTCTCAATGTTAAAGGTTCTAGTTTTTAGATAGAAACAAAT
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:34351188-34351207
TCTATTTTTATTTGAAAAACTTAAACCTTT34351188AACATTGAGACCCTTCAAGATTCGAATTCTGAATCTGTCACTGCACACTA
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:32789108-32789127
TCTATTTTTATCTGAAAAACTTAAACCTTT32789108AACATTGAGACCCTTCAAGATTCGAATTCTGAATCTATCACTGCACACTA
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:723501851-723501870
TAAAAATTCTTTTAACAAACTTCAAGCTAG723501851AACATTGAGACCCTTCAAGATAATCAACAGACAAGGACCCAATGTATATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTTGAAGGGTCTCAATGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTGAAGGGTCTCAATGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.159 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTGAAGGGTCTCAATGTT&k=0&no_gap=0&offset=0&limit=50
0.257 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=AACATTGAGACCCTTCAAGA&k=0&no_gap=0&offset=0&limit=43
0.260 | 0.002 | cgi_end;

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