GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:20:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Manihot esculenta mRNA, clone: CAS01_016_H06, 3'end.
DB943826.1:368-394
TGACATATGTCTTCCTTGCCTGTGTTTCCT368TCTTGGCTGTGATGATCTTGGAATGAAAACTCCTGTTCCTTTGCTTTCTCTTCTTTG
Manihot esculenta mRNA, clone: CAS01_016_H06, 5'end.
DB925623.1:314-340
CAAAGAAGAGAAAGCAAAGGAACAGGAGTT314TTCATTCCAAGATCATCACAGCCAAGAAGGAAACACAGGCAAGGAAGACATTCTTCA
U_SX-PL011N01_A_plate20c16.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG979392.1:316-342
CAAAGAAGGGAAAGCAAAGGAACAGGAGTT316TTCATTCCAAGATCATCACAGCCAAGAAGGAAACACAGGCAAGGAAGACATTCTTCA
U_SX-PL011N01_A_plate20l07.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG979538.1:316-342
CAAAGAAGGGAAAGCAAAGGAACAGGAGTT316TTCATTCCAAGATCATCACAGCCAAGAAGGAAACACAGGCAAGGAAGACATTCTTCA
U_SX-PL011N01_A_plate27i02.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG981342.1:316-342
CAAAGAAGGGAAAGCAAAGGAACAGGAGTT316TTCATTCCAAGATCATCACAGCCAAGAAGGAAACACAGGCAAGGAAGACATTCTTCA
U_SX-PL011N01_A_plate46c01.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG987050.1:315-341
CAAAGAAGGGAAAGCAAAGGAACAGGAGTT315TTCATTCCAAGATCATCACAGCCAAGAAGGAAACACAGGCAAGGAAGACATTCTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTGGCTGTGATGATCTTGGAATGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTGGCTGTGATGATCTTGGAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTGGCTGTGATGATCTTGGAATGAA&k=0&no_gap=0&offset=0&limit=50
0.692 | 0.525 | search_minus_done; http://172.18.8.135:50400/match?q=TTCATTCCAAGATCATCACAGCCAAGA&k=0&no_gap=0&offset=0&limit=49
0.695 | 0.003 | cgi_end;

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