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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 03:58:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus BAC clone RP23-33B7 from chromosome 10, complete sequence.
AC122188.4:154605-154622
CTTCCTCTGTGGTCCTGAAGGTACTCAGGG154605TCTTGTGAATGTTAGGCAAGTTAGTACTCCTTAGCCCTCTCTTTTGGA
Mus musculus BAC clone RP24-162O18 from 17, complete sequence.
AC154237.1:20808-20825
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20808TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Cavia porcellus clone CH234-34N9, complete sequence.
AC174609.3:129437-129454
TGTGTTCAGTGCTGAGAATCAAACTCAGCA129437TCTTGTGAATGTTAGGCAAGTGCTCTGTTACTGAGAGATCACCATATC
Sciurus carolinensis genome assembly, chromosome: 1.
LR738590.1:183004167-183004184
TCCCCCCAGCGTTGGGGATTGAACCCAGGG183004167TCTTGTGAATGTTAGGCAAGGGCTCTACCATTGAGTATACCCCTACCC
Sciurus carolinensis genome assembly, chromosome: 3.
LR738592.1:129721706-129721723
GGTGGACAGTAACAGAGATTGGACCCAGAA129721706TCTTGTGAATGTTAGGCAAGTGCTTTGTCACTGAGTTATTTTTATTTT
Sciurus vulgaris genome assembly, chromosome: 3.
LR738613.1:134521000-134521017
GGTGGGCAGTAACAGAGATTGGACCCAGAG134521000TCTTGTGAATGTTAGGCAAGTGCTTTGTCACTGAGTTATTTTTATTTT
Arvicola amphibius genome assembly, chromosome: 2.
LR862381.2:157580979-157580996
TGCGTGCGTGCGTATGTGTGTGATTTGGGG157580979TCTTGTGAATGTTAGGCAAACATTCTATTTCTGAGCTATACTCATAGC
Onychomys torridus genome assembly, chromosome: 4.
LR877191.1:141816461-141816478
AGACACCTCTCTCACCCCCCACCTCCAGGG141816461TCTTGTGAATGTTAGGCAAGCACTCTACCATTTTGCTGTAACCCCTCT
Onychomys torridus genome assembly, chromosome: 7.
LR877194.1:42524223-42524240
CTTATTTGGTGTAGGGAATCAAATCCAGTA42524223TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGATTTTTGTTG
Mus musculus genome assembly, chromosome: 17.
OW971559.1:20087672-20087689
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20087672TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971590.1:19914684-19914701
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC19914684TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971611.1:20090273-20090290
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20090273TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus domesticus genome assembly, chromosome: 17.
OW971633.1:20770002-20770019
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20770002TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971653.1:20317455-20317472
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20317455TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus molossinus genome assembly, chromosome: 17.
OW971674.1:21579484-21579501
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC21579484TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971707.1:20384108-20384125
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20384108TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971737.1:20025237-20025254
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20025237TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971758.1:21044066-21044083
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC21044066TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus musculus genome assembly, chromosome: 17.
OW971779.1:19490270-19490287
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC19490270TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971800.1:20021151-20021168
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20021151TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971821.1:22132409-22132426
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC22132409TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OW971852.1:20075862-20075879
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC20075862TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Heterocephalus glaber genome assembly, chromosome: 5.
OX090913.1:100553073-100553090
TTTATTGGGTTCCAAGAACTGCACCCAGGG100553073TCTTGTGAATGTTAGGCACATTCCCTACAATTGAGCTACATAGCCAGC
Heterocephalus glaber genome assembly, chromosome: 13.
OX090921.1:68766543-68766560
TTTTGGTGGTGCTGGGAATTGAACTCAGGG68766543TCTTGTGAATGTTAGGCAAATGCTCTACCACTGAGATACATCCCCAGC
Heterocephalus glaber genome assembly, chromosome: 13.
OX090953.1:3505375-3505392
TTTTGGTGGTGCTGGGAATTGAACTCAGGG3505375TCTTGTGAATGTTAGGCAAATGCTCTACCACTGAGATACATCCCCAGC
Mus musculus genome assembly, chromosome: 17.
OX389811.1:25451543-25451560
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC25451543TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OX390160.1:23529909-23529926
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC23529909TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus genome assembly, chromosome: 17.
OX439030.1:26670046-26670063
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC26670046TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Onychomys arenicola genome assembly, chromosome: 7.
OX460353.1:43976137-43976154
CTTATTTGGTGTAGGGAGTCAAATCCAGTG43976137TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGGTTTTTGTTG
Onychomys leucogaster genome assembly, chromosome: 7.
OX460377.1:43614927-43614944
CTTATTTGGTGTAGGGAATCAAATCCAGTA43614927TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGGTTTTTGTTG
Peromyscus eremicus genome assembly, chromosome: 7.
OX460400.1:43565014-43565031
GCTTATTTGGTGTAGGAATCAAATCCAATG43565014TCTTGTGAATGTTAGGCAAGTGTTGTGCCAGCTGAGTGGTTTTTGTTG
Onychomys leucogaster genome assembly, chromosome: 7.
OX460424.1:42105649-42105666
CTTATTTGGTGTAGGGAATCAAATCCAGTA42105649TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGGTTTTTGTTG
Onychomys arenicola genome assembly, chromosome: 7.
OX460448.1:44636707-44636724
CTTATTTGGTGTAGGGAGTCAAATCCAGTG44636707TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGGTTTTTGTTG
Peromyscus eremicus genome assembly, chromosome: 7.
OX460472.1:42755738-42755755
GCTTATTTGGTGTAGGAATCAAATCCAATG42755738TCTTGTGAATGTTAGGCAAGTGTTGTGCCAGCTGAGTGGTTTTTGTTG
Onychomys torridus genome assembly, chromosome: 4.
OX460885.1:141816461-141816478
AGACACCTCTCTCACCCCCCACCTCCAGGG141816461TCTTGTGAATGTTAGGCAAGCACTCTACCATTTTGCTGTAACCCCTCT
Onychomys torridus genome assembly, chromosome: 7.
OX460888.1:42524223-42524240
CTTATTTGGTGTAGGGAATCAAATCCAGTA42524223TCTTGTGAATGTTAGGCAAGTGTTATGCTAGCAGAGTGATTTTTGTTG
Muscardinus avellanarius genome assembly, chromosome: 20.
OY726577.1:4608477-4608494
TAAGTCAAAACTTTTCCAGTAAATACGCTG4608477TCTTGTGAATGTTAGGCATAGGAGCTAGGCATGGTGGTGCGTACCTGT
Erpetoichthys calabaricus genome assembly, chromosome: 1.
LR536432.2:112362743-112362760
GTTGTATTGCCCCGCTTTGCGCCTACTGAT112362743TCTTGTGAATGTTAGGCACCGCCATTTCAGGTTAACAGAATCTTTCTG
Scyliorhinus canicula genome assembly, chromosome: 6.
LR744035.1:131322135-131322152
AGAGGGGTATGCTGGGGGTTGTGAACATAT131322135TCTTGTGAATGTTAGGCATTTTGTGAATTAGGTGCTATTTTATTAAAG
Scyliorhinus canicula genome assembly, chromosome: 18.
LR744047.1:30906603-30906620
ATGGAAATTTCATCAATGTCTCTCCTGTGC30906603TCTTGTGAATGTTAGGCAATTTTCCGATCACCAATACAGCTTTCCATT
Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Abca3:tm1a(EUCOMM)Hmgu; transgenic.
JN952367.1:9348-9365
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC9348TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
Mus musculus targeted non-conditional, lacZ-tagged mutant allele Abca3:tm1e(EUCOMM)Hmgu; transgenic.
JN952579.1:9348-9365
CTGAGTGTCGCTGGGGGCCTTGAACCAGGC9348TCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGG
603175004F1 NCI_CGAP_Mam5 Mus musculus cDNA clone IMAGE:5257777 5', mRNA sequence.
BI453743.1:743-760
TCAGACCACATCATGGCAGCTCCCATCCGC743TCTTGTGAATGTTAGGCAAAATCTTAAAACTTTTTATGTCTTCAGAAA
Rattus norvegicus clone CH230-338D2, WORKING DRAFT SEQUENCE, 27 unordered pieces.
AC141370.2:31521-31538
TCTCAGCAGTGCTAGGAATAGAAACTCAAG31521TCTTGTGAATGTTAGGCAACTGCTTTACTACTGTGCTTTTCAACAACC
Rattus norvegicus clone CH230-285L7, WORKING DRAFT SEQUENCE, 18 unordered pieces.
AC142163.2:139029-139046
TCTCAGCAGTGCTAGGAATAGAAACTCAAG139029TCTTGTGAATGTTAGGCAACTGCTTTACTACTGTGCTTTTCAACAACC
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 6.
CP094636.1:32577100-32577117
TCATGTTTGTAACTCTTTGTTATCCTACCT32577100TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCACGAC
Camelina sativa cultivar CO46 chromosome 11.
CP131541.1:49538368-49538385
TCATGTTTGTAACTCTTTGTTATCCTACCT49538368TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCACGAC
Camelina sativa cultivar CO46 chromosome 2.
CP131550.1:29976077-29976094
TCGTGTTTGTAACTCTTTGTTATCCTACCT29976077TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCACGAC
Capsella bursa-pastoris isolate WGS_leaf chromosome 16.
CP144198.1:16489276-16489293
TCATGTTTGTATCTCTTTACTATCATACCT16489276TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCACGAC
Citrus reshni microsatellite DNA, locus mCrCIR04F01.
FR692368.1:26-43
ACCCTCACGAACATGATTGATCAAA26TCTTGTGAATGTTAGGCAATGGCAGAAAAGGTATTTGTAGAGAAAGAG
Arabis alpina genome assembly, chromosome: 8.
LT669795.1:47672146-47672163
TCATGTTTGTAACTATTTGTTATCCTACCT47672146TCTTGTGAATGTTAGGCAGGCATTGGCACTGATGCGACAATGCACGAC
Lepidium didymum genome assembly, chromosome: 13.
OY986985.1:1717015-1717032
TCATGTTTGTAACTAATTAGTATCCTACCT1717015TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCATGAC
Lepidium didymum genome assembly, chromosome: 14.
OY986986.1:16239723-16239740
ATCATGTTTGTAACTATTTATTATTTATCT16239723TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCATGAC
Cornus suecica genome assembly, chromosome: 10.
OY998247.1:39693076-39693093
CCATTCTTAGCAGAGATCCAGATACTAAGT39693076TCTTGTGAATGTTAGGCAGAAATGTCTATATTTCCGATATCATTTGAT
Cardamine chenopodiifolia genome assembly, chromosome: 32.
OZ000490.1:21746506-21746523
TCTTATCTGATCATGTTTAATACCCCACCT21746506TCTTGTGAATGTTAGGCAGGCATTGGCACCGATGCGACAATGCATGAC
Oscheius dolichura genome assembly, chromosome: IV.
OW051495.1:1486592-1486609
AGCAATTCAGTAAGCGGATTTACTTTCCTT1486592TCTTGTGAATGTTAGGCAGAACATAAAAAATCGCATATGGATGTGCAT
Dasysyrphus albostriatus genome assembly, chromosome: 1.
OX276335.1:187857088-187857105
CTTCTGGCCAAAGTCAAGGGTTTGGAACAC187857088TCTTGTGAATGTTAGGCATTCGTGCGTACCTACCTTTGAAACATCAAA
Amaurobius ferox genome assembly, chromosome: 4.
OX578137.1:157570207-157570224
CGAATGCAGATCCAGTTTATAGAAGGAAAA157570207TCTTGTGAATGTTAGGCACCAAAAACGTTGACTTTTCTAAATGTAATT
Sepiola atlantica genome assembly, chromosome: 9.
OY744523.1:74202618-74202635
ATTTTCTATGTATTTATTCCAATTGATGTT74202618TCTTGTGAATGTTAGGCAAATGAGTTTTAACGTTTGGCTCTCGGAAAG
Lucinisca nassula genome assembly, chromosome: 12.
OY757021.1:26774554-26774571
TATCACCTAATACGTCGGCTCTCGTAAACC26774554TCTTGTGAATGTTAGGCATCTTGTGAATAGCGACCCATTTACCGACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTGTGAATGTTAGGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTGTGAATGTTAGGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.137 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTGTGAATGTTAGGCA&k=0&no_gap=0&offset=0&limit=50
0.192 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=TGCCTAACATTCACAAGA&k=0&no_gap=0&offset=0&limit=0
0.192 | 0.000 | cgi_end;

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