GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:28:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:96473253-96473271
CCAGGGTCAATCTTCTAATACACAACTGCC96473253TCTTTGTGCAAAAGCATCTTTTGTGCCTTACCGTGTGCCATGTACGCTG
Pig DNA sequence from clone CH242-231E9 on chromosome 6.
CR956382.7:148649-148667
CCAGGGTCAATCTTCTAATACACAACTGCC148649TCTTTGTGCAAAAGCATCTTTTGTGCCTTACCGTGTGCCATGTACGCTG
Martes martes genome assembly, chromosome: 2.
OY734064.1:32781594-32781612
GTGATTGTGTCTACCTGGAGGAAGGAGCGT32781594TCTTTGTGCAAAAGCATCTGTCTACCAAGCAAGGTATCAGCAGAGCTGT
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:98792592-98792610
CCAGGGTCAATCTTCTAATACACAACTGCC98792592TCTTTGTGCAAAAGCATCTTTTGTGCCTTACCGTGTGCCATGTACGCTG
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 18.
CP133519.1:4651689-4651707
TTTGAATGCTCTCAGCCTCTCTTGTGAGTC4651689TCTTTGTGCAAAAGCATCTGCTAAATGACTGGATGAGAACGCAAAACAT
Erpetoichthys calabaricus genome assembly, chromosome: 17.
LR536448.2:23944943-23944961
TTATTTCCGAACTAGTTTTACAGTTGGAAT23944943TCTTTGTGCAAAAGCATCTTATTCATTGGTTTCTGTTCATTCAGAAAGG
Podarcis cretensis genome assembly, chromosome: 5.
OX638153.1:31818405-31818423
GTGGGATCCAGCATCCAAGCCACTCTTTCT31818405TCTTTGTGCAAAAGCATCTCCAAACATTCTAGTTACTGTGCATATAAGA
RT00014R_T3_014_D01_28MAY2004_009_ab1 CrUniGene root Catharanthus roseus cDNA similar to homeodomain leucine zipper protein Revoluta rev / fascicular fiberless 1 IFL1 z, mRNA sequence.
FD422411.1:283-301
TTCCACCTCTCTTTCCTTGCTTGGAGGCAT283TCTTTGTGCAAAAGCATCTATGCTGCTTCAGAATGTTCCTCCTGCTGTG
CCPN3697.b1 CCPN Wrightia tinctoria developing embryos (L) Wrightia tinctoria cDNA clone CCPN3697 5', mRNA sequence.
HS560693.1:721-739
TTCTACCTCTCTTTCCTTGCTTGGAGGCAT721TCTTTGTGCAAAAGCATCTATGCTGCTTCAGAATGTGCCTCCTGCTGTG
CCPN5040.b1 CCPN Wrightia tinctoria developing embryos (L) Wrightia tinctoria cDNA clone CCPN5040 5', mRNA sequence.
HS563137.1:262-280
TTCTACCTCTCTTTCCTTGCTTGGAGGCAT262TCTTTGTGCAAAAGCATCTATGCTGCTTCAGAATGTGCCTCCTGCTGTG
Fraxinus pennsylvanica genome assembly, chromosome: 9.
OU503044.1:30033313-30033331
ATCAAATAACCTTTCCTTTATTGGAGGCGT30033313TCTTTGTGCAAAAGCATCTATGCTACTTCAGGTGATTTTATGTATAATT
Quercus cerris genome assembly, chromosome: 1.
OY770006.1:356180-356198
AAGCTATTGGCTCCGTCAATAGCTTTAAAC356180TCTTTGTGCAAAAGCATCTAGATCCTTTTCAATTGATAGATTATTGAAG
Bacillus sp. Cs-700 chromosome, complete genome.
CP041063.1:708801-708819
AGCCATGGCTTTCCCCATTCGTTCTTGACT708801TCTTTGTGCAAAAGCATCTTGTTCTTCTCGAGTAATGTGATATTTTTCG
Entomobacter blattae strain G55GP chromosome, complete genome.
CP060244.1:1466386-1466404
AGCATCTGTAGTAGAATAAGTATCAAGCAG1466386TCTTTGTGCAAAAGCATCTGACTGTTTTTCTGAAAGGATGTTAAGTGTG
Acleris emargana genome assembly, chromosome: 3.
OV656838.1:20184041-20184059
TAGGTAATTTCATTTTTGTTTTTTGAATTA20184041TCTTTGTGCAAAAGCATCTTTTAAAGGCCTCACTAGATGCAATGCTGTC
Chalcosyrphus nemorum genome assembly, chromosome: 4.
OX454335.1:5879207-5879225
TATCTGATTTGGAACCAGATTTTGGTTGGT5879207TCTTTGTGCAAAAGCATCTGAAGTTTGTCTCATCTGAATTTCTTCTTAG
Sepioteuthis lessoniana genome assembly, chromosome: 34.
OY757937.1:48755801-48755819
GACATGTTTATAGATGGCTCGTAAGGTCAA48755801TCTTTGTGCAAAAGCATCTCAGTTCAGGCATAGAATTAACACTGAAGTG
Pollenia griseotomentosa genome assembly, chromosome: 2.
OZ007561.1:192907436-192907454
ACATTCTATAATTTTCTTATAGCCTTAATA192907436TCTTTGTGCAAAAGCATCTGTGTTATGGATACATATGTTTGCATGTATA
Arvicola amphibius genome assembly, chromosome: 4.
LR862383.1:99786177-99786195
GCAGCATATTTATGTCATAATGACTGTGAC99786177AGATGCTTTTGCACAAAGAAAAGTTCTTTAAGACTATGAAAATCAGCTT
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 18.
CP133542.1:5331022-5331040
ATGTTTTGCGTTCTCATCCAGTCATTTAGC5331022AGATGCTTTTGCACAAAGAGACTCACAAGAGAGGCTGAGAGCATTCAAA
Apteryx australis mantelli genome assembly, scaffold: scaffold179.
LK064751.1:25528-25546
GCCCTTCCTGGCTTCAACCTTGTGTTTGAA25528AGATGCTTTTGCACAAAGAAGACACTTGTAAATCTCCAGGCTAAGTGTA
Raja brachyura genome assembly, chromosome: 9.
OY740789.1:36320856-36320874
CAGTTCCTTGTGTTTAATTCTATTTTCAGA36320856AGATGCTTTTGCACAAAGATGTTAGAAACCTGAGGGGCAACGTTTTGAC
TSA: Speleonectes cf. tulumensis BMR-2011 DMPC15176723, mRNA sequence.
JL195437.1:24-42
CATAAAAAGTTAATAGCAGACAA24AGATGCTTTTGCACAAAGACTTTTTGTTGGAAAAAGAATCATTAGAAAA
Sus scrofa GSS, clone WTSI_1005-334G9, end sequence WTSI_1005-334G9.R.
HE199495.1:172-190
CAGCGTACATGGCACACGGTAAGGCACAAA172AGATGCTTTTGCACAAAGAGGCAGTTGTGTATTAGAAGATTGACCCTGG
Quercus dentata isolate Qdleaves-2020 chromosome 2.
CP116445.1:111892462-111892480
CTTCAATAATCTATCAATTGAAAAGAATCT111892462AGATGCTTTTGCACAAAGAGTTTAAAGCTATTGACGGAGCCAATAGCTT
Quercus variabilis isolate HB chromosome 2b.
CP129434.1:96890371-96890389
CTTCAATAATCTATCAATTGAAAAGAATCT96890371AGATGCTTTTGCACAAAGAGTTTAATGCTATTGACAGAGCCAATAGCTT
Quercus variabilis isolate HB chromosome 2a.
CP129446.1:97783042-97783060
CTTCAATAATCTATCAATTGAAAAGGATCT97783042AGATGCTTTTGCACAAAGAGTTTAAAGCTATTGACGGAGCCAATAGCTT
Quercus robur genome assembly, chromosome: 2.
OW028766.1:97791014-97791032
CTTCAATAATCTATCAATTGAAAAGAATCT97791014AGATGCTTTTGCACAAAGAGTTTAAAGCTATTGACGGAGCCAATAGCTT
Smittia sp. YW1114-2 chromosome 1.
CP093832.1:7361342-7361360
GGAAATTTTCAGGAACAGCATTTTGACGCC7361342AGATGCTTTTGCACAAAGAGTGTGTAAGGAATCTTGTTTGTTTTCACAC
Xestia c-nigrum genome assembly, chromosome: 18.
OU745261.1:17426754-17426772
TTCCTGAAACATTTACAAGCATAATTGTGA17426754AGATGCTTTTGCACAAAGAGATCAGGTTCAGGAGGTGAGAATTGTCCAG
Diarsia mendica genome assembly, chromosome: 21.
OX438907.1:16008923-16008941
ATTTCCTGAAACAAGTATAAAAAGTTGTGA16008923AGATGCTTTTGCACAAAGACAACATCAGGAGGCGAGAATTGTCCAGCGA
Xestia ashworthii genome assembly, chromosome: 20.
OX465567.1:16355106-16355124
CTGAAACATTTACAAGCATAAAAATTGTGA16355106AGATGCTTTTGCACAAAGAGACCGTCAGGAGGCGAGAATTGTCCAGCGA
Pyrausta aurata genome assembly, chromosome: 10.
OY757261.1:2274037-2274055
TATGTATATTGCAGATACCTAAAGACTCGT2274037AGATGCTTTTGCACAAAGAAGTATTTTGCTAATTTTTATAATTCAATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTTTGTGCAAAAGCATCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTTGTGCAAAAGCATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.432 | 0.423 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTTGTGCAAAAGCATCT&k=0&no_gap=0&offset=0&limit=50
0.616 | 0.184 | search_minus_done; http://172.18.8.135:50400/match?q=AGATGCTTTTGCACAAAGA&k=0&no_gap=0&offset=0&limit=32
0.626 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).