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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 15:41:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:22169128-22169150
GTTATTCTTTATAGTGCAACCTCACTAAAT22169128TCTTTGTGTTTGTGTGTGGCGTGTTTACTTTATTGTTCATATATTAGCATAGC
Malus domestica genome assembly, chromosome: 15.
OU696691.1:22049345-22049367
GTTATTCTTTATAGTGCAACCTCACTAAAT22049345TCTTTGTGTTTGTGTGTGGCGTGTTTACTTTATTGTTCATATATTAGCATAGC
Malus domestica genome assembly, chromosome: 15.
OU744556.1:22005466-22005488
GTTATTCTTTATAGTGCAACCTCACTAAAT22005466TCTTTGTGTTTGTGTGTGGCGTGTTTACTTTATTGTTCATATATTAGCATAGC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:591768-591790
GTAGCCAAAGTTCACCGAACCTGGCTAAAT591768TCTTTGTGTTTGTGTGTGGCGTGTGTACTTTATTGTTCATATATAAGCATAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:626987-627009
GTAGCCAAAGTTCGCCAAACCTGGCTAAAT626987TCTTTGTGTTTGTGTGTGGCGTGTGTACTTTATTGTTCTTATATCTGCATAAA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:658193-658215
GTAGCCAAAGTTCGCCAAACCTGGCTAAAT658193TCTTTGTGTTTGTGTGTGGCGTGTGTACTTTATTGTTCTTATATCTGCATAAA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:716966-716988
GTAGCCAAAGTTCGCCAAACCTGGCTAAAT716966TCTTTGTGTTTGTGTGTGGCGTGTGTACTTTATTGTTCTTATATCTGCATAAA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:17026201-17026223
GTTATTCTCTATAGTGCAACCTCACTAAAT17026201TCTTTGTGTTTGTGTGTGGCGTGTTTACTTTATTGTTCATATATTCGCAGAGC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:30902556-30902578
GGTGATTAAGTTCGCTGAACTTCACTATAT30902556TCTTTGTGTTTGTGTGTGGCGTGTTTACTTTGTTGTTCATATATTTGCATGCA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:444854-444876
GTAGCCAAAGTTCGCCAAACCTGGCTAAAT444854TCTTTGTGTTTGTGTGTGGCGTGTGTACCTTGTTGTTCTTATATCCGCATAAC
Echiichthys vipera genome assembly, chromosome: 1.
OY829646.1:10373706-10373728
TGGACAAAATCAGCATATAATGTGCATGTA10373706CACGCCACACACAAACACAAAGACACACATAGCTGTGAAGTGAACATGACAGC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:5871905-5871927
GCGATGCGAATATATGAACAACAAAGTAAA5871905CACGCCACACACAAACACAAAGAATTTAGCAAGGTTTGGTGAACTTTGCCTAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:41237338-41237360
TTTATGTGGATATAAGAACAATAAAGTACA41237338CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGAGAAA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:31374152-31374174
GCTATGCTAATATATGAACAATAAAGTAAA31374152CACGCCACACACAAACACAAAGAATTTAGTGAGGTTGCACCATAAAGAATAAC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:6316351-6316373
GCTATGCGAATATATGAACAATAAAGTAAA6316351CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGCAAACTTTGCCTAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:40705637-40705659
TTTATGCGGATATAAGAACAATAAAGTACA40705637CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGTTACAAGAACTTAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:40724751-40724773
TTTATGCGGATATAAGAACAATAAAGTACA40724751CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGGCTAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:34389348-34389370
GCTATGCTAATATATGAACAATAAAGTAAA34389348CACGCCACACACAAACACAAAGAATTTAGTGAGGTTGCACTATAAAGAATAAC
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:6011974-6011996
GCGATGCGAATATATGAACAACAAAGTAAA6011974CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGTGAACTTTGCCTAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:41020284-41020306
TTTATGCAGATATAAGAACAATAAAGTACA41020284CACGCCACACACAAACACAAAGAATTTAGCCAGGTTTGGCGAACTTTGGCTAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:41059302-41059324
GGCCTACTTATATATGAACAATAAAGTACA41059302CACGCCACACACAAACACAAAGAATTTAGCCAGATTCGGTGAACTTTGGCTAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:30656911-30656933
GCTATGCTAATATATGAACAATAAAGTAAA30656911CACGCCACACACAAACACAAAGAATTTAGTGAGGTTGCACCATAAAGAATAAC
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:5905437-5905459
GCGATGCGAATATATGAACAACAAAGTAAA5905437CACGCCACACACAAACACAAAGAATTTAGCAAGGTTTGGTGAACTTTGCCTAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:42365093-42365115
GGCCTACTTATATATGAACAATAAAGTACA42365093CACGCCACACACAAACACAAAGAATTTAGCCAGATTCGGTGAACTTTGGCTAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:31571404-31571426
GCTATGCTAATATATGAACAATAAAGTAAA31571404CACGCCACACACAAACACAAAGAATTTAGTGAGGTTGCACCATAAAGAATAAC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:6209039-6209061
GCTATGCGAATATATGAACAATAAAGTAAA6209039CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGCGAACTTTGCCTAC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:5601744-5601766
GCGATGCGAATATATGAACAATAAAGTAAA5601744CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGCGAACTTTGCCTAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:38875785-38875807
GTTATGCGTATATATGAACAATAAAGTACA38875785CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGTGAACTTTGGCTAC
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:6287860-6287882
GCTATGCGAATATATGAACAATAAAGTAAA6287860CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGCGAACTTTGCCTAC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:40744399-40744421
TTTATGCGGATATAAGAACAATAAAGTACA40744399CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGGCTAC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:41236310-41236332
TTTATGCGGATATAAGAACAATAAAGTACA41236310CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGTTACAAGAACTTAT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:41255428-41255450
TTTATGCGGATATAAGAACAATAAAGTACA41255428CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGGCTAC
Malus domestica genome assembly, chromosome: 4.
OU744545.1:6295048-6295070
GCTATGCGAATATATGAACAATAAAGTAAA6295048CACGCCACACACAAACACAAAGAATTTAGCAAGGTTCGGCGAACTTTGCCTAC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:40445555-40445577
TTTATGCGGATATAAGAACAATAAAGTACA40445555CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGTTACAAGAACTTAT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:40464671-40464693
TTTATGCGGATATAAGAACAATAAAGTACA40464671CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGGCTAC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:41770170-41770192
TTTATGCGGATATAAGAACAATAAAGTACA41770170CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGTTACAAGAACTTAT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:41789288-41789310
TTTATGCGGATATAAGAACAATAAAGTACA41789288CACGCCACACACAAACACAAAGAATTTAGCCAGGTTCGGCGAACTTTGGCTAC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:31007345-31007367
GCTATGCTAATATATGAACAATAAAGTAAA31007345CACGCCACACACAAACACAAAGAATTTAGTGAGGTTGCACCATAAAGAATAAC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:32733798-32733820
GCTATACAAATATATGAAAAATATAGTAAA32733798CACGCCACACACAAACACAAAGAATTTTGCAAGGTACAACAAACTTTGCCTAC
Ectropis crepuscularia genome assembly, chromosome: 9.
OY856347.1:17773205-17773227
ATTTAAAAATAAAACAAAAGTTACTTATAG17773205CACGCCACACACAAACACAAAGAAAAACGCCGTGAACAAATTACCCTTTTAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTTTGTGTTTGTGTGTGGCGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTTGTGTTTGTGTGTGGCGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.370 | 0.361 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTTGTGTTTGTGTGTGGCGTG&k=0&no_gap=0&offset=0&limit=50
0.518 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=CACGCCACACACAAACACAAAGA&k=0&no_gap=0&offset=0&limit=40
0.538 | 0.020 | cgi_end;

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