GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:11:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig24300, mRNA sequence.
JW074544.1:663-682
CCACTTTTCTCCTCCAGCTTTCCCGACAGC663TGAAACAGCCTTGACATTCGGATTCTCTTTTTTAAATGTCTTCCGGAATT
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:99224301-99224320
CTAATGAAATAATCATCAAAAGCTTACAGC99224301TGAAACAGCCTTGACATTCGGATTCTCTTTTTTAAATGTCTTCCGGAATT
Coelioxys conoideus genome assembly, chromosome: 5.
OX392453.1:6870660-6870679
GTAGTTTGCGCAGTTGAGGATCACTAAATT6870660TGAAACAGCCTTGACATTCGAACTTCCTTTAATCGCTTTAATGTTGTAGC
KS01054H03 KS01 Capsicum annuum cDNA, mRNA sequence.
BM063385.1:300-319
AATTCCGGAAGACATTTAAAAAAGAGAATC300CGAATGTCAAGGCTGTTTCAGCTGTCGGGAAAGCTGGAGGAGAAAAGTGG
BJ02003F11 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO906522.1:53-72
AATTCCGGAAGACATTTAAAAAAGAGAATC53CGAATGTCAAGGCTGTTTCAGCTGTCGGGAAAGCTGGAGGAGAAAAGTGG
BJ02012A08 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO907045.1:359-378
AATTCCGGAAGACATTTAAAAAAGAGAATC359CGAATGTCAAGGCTGTTTCAGCTGTAAGCTTTTGATGATTATTTCATTAG
BJ02055B06 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO909981.1:53-72
AATTCCGGAAGACATTTAAAAAAGAGAATC53CGAATGTCAAGGCTGTTTCAGCTGTCGGGAAAGCTGGAGGAGAAAAGTGG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:166135949-166135968
AATTCCGGAAGACATTTAAAAAAGAGAATC166135949CGAATGTCAAGGCTGTTTCAGCTGTAAGCTTTTGATGATTATTTCATTAG
Aporrectodea icterica genome assembly, chromosome: 8.
OY744609.1:57652581-57652600
GATAGTGAGTGAAGTGACGAGGAAACGCAG57652581CGAATGTCAAGGCTGTTTCACCACGTGCAAAGATGGAAGTGTATATAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAACAGCCTTGACATTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAACAGCCTTGACATTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAACAGCCTTGACATTCG&k=0&no_gap=0&offset=0&limit=50
0.303 | 0.169 | search_minus_done; http://172.18.8.135:50400/match?q=CGAATGTCAAGGCTGTTTCA&k=0&no_gap=0&offset=0&limit=47
0.307 | 0.004 | cgi_end;

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