GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:54:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2010395-2010419
GTTACATTCACTAGGGCATCGTAAATTGAT2010395TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATATATATATA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:1974740-1974764
GTTACATTCACTAGGGCATCGTAAATTGAT1974740TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATATATACACA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2514000-2514024
GAACAACTCACTAGGGCATCGTAAATTGAT2514000TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATACATACTGA
Brassica rapa genome, scaffold: A01.
LR031571.1:1965273-1965297
GTTACATTCACTAGGGCATCGTAAATTGAT1965273TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATATATACACA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2448882-2448906
GAACAACTCACTAGGGCATCGTAAATTGAT2448882TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATACATACTGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:1965399-1965423
GTTACATTCACTAGGGCATCGTAAATTGAT1965399TGAAACTGGTCTAAACAAGCTCAAACTTATATGCACATATATATATATATACACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036M17, complete sequence.
AC189325.2:61837-61861
TATATATATATATATATATGTGCATATAAG61837TTTGAGCTTGTTTAGACCAGTTTCAATCAATTTACGATGCCCTAGTGAATGTAAC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54580186-54580210
TCAGTATGTATATATATATGTGCATATAAG54580186TTTGAGCTTGTTTAGACCAGTTTCAATCAATTTACGATGCCCTAGTGAGTTGTTC
Brassica napus clone BAC CZ7N2, complete sequence.
KC206509.1:166189-166213
TGTGTATATATATATATATGTGCATATAAG166189TTTGAGCTTGTTTAGACCAGTTTCAATCAATTTACGATGCCCTAGTGAATGTAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAACTGGTCTAAACAAGCTCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAACTGGTCTAAACAAGCTCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAACTGGTCTAAACAAGCTCAAA&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGAGCTTGTTTAGACCAGTTTCA&k=0&no_gap=0&offset=0&limit=44
0.141 | 0.002 | cgi_end;

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