GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 18:28:06, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo isolate PI 511890 chromosome 1.
CP136102.1:34293415-34293436
GGAAGGCTTATGTACACACCACAAAGGATA34293415TGAAATCGAAGTCCACTCTGAAAGATTTAAAAAAAAAAAAGAGAGAGAGAGA
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_contig0094552.
LN314648.1:455-476
GGAGCCAATCTTCTGAATAAAAAACACTTG455TGAAATCGAAGTCCACTCTGAAAGAGGAGATGTGTTTATTTAGCCCTTTTCT
Xestobium rufovillosum genome assembly, chromosome: 11.
OZ014502.1:11391129-11391150
ATGAAAATATAATTTACCAGTATTAAGAGG11391129TGAAATCGAAGTCCACTCTGAAGTTTCAGGATTAAAAACATCACATTGTTTA
Cucumis melo subsp. melo EST, clone HS_32-H08-M13R.
AM724258.2:134-155
TCTCTCTCTCTTTTTTTTTTTTTTAAATCT134TTCAGAGTGGACTTCGATTTCAAATCCTTTGTGGTGTGTACATAAGCCTTCC
Cucumis melo subsp. agrestis EST, clone A_31-B02-M13R.
AM728345.2:382-403
TCTCTCTCTCTCTCTTTTTTTTTTAAATCT382TTCAGAGTGGACTTCGATTTCATATCCTTTGTGGTGTGTACATAAGCCTTCC
Cucumis melo genomic scaffold, anchoredscaffold00034.
LN681792.1:2684837-2684858
CTCTCTCTCTCTCTCTTTTTTTTTAAATCT2684837TTCAGAGTGGACTTCGATTTCATATCCTTTGTGGTGTGTACATAAGCCTTCC
Cucumis melo genomic chromosome, chr_1.
LN713255.1:2684837-2684858
CTCTCTCTCTCTCTCTTTTTTTTTAAATCT2684837TTCAGAGTGGACTTCGATTTCATATCCTTTGTGGTGTGTACATAAGCCTTCC
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_scaffold0067722.
LN070217.1:3090-3111
TGAAAAGGCTAACTAGAACACATCTTCTCT3090TTCAGAGTGGACTTCGATTTCACAAATGTTTTTTTATTCCGAATTTTGGCTC
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_scaffold0072021.
LN074829.1:3038-3059
AAAAAAAGGCTTAATAGACACATCTTCCCT3038TTCAGAGTGGACTTCGATTTCATAAGTGTTTTTGTTATTCAGAAGATTGGCT
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_scaffold0186090.
LN227969.1:1023-1044
AGAAAAGGGCTAAATAAAAACATCTCCTCT1023TTCAGAGTGGACTTCGATTTCACAAGTGTCTTTTATTCAGAAGATTGGCTCC
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_scaffold0197091.
LN250747.1:1100-1121
TAAAAAAGGCTCAATAGACACATCTTCCCT1100TTCAGAGTGGACTTCGATTTCACAAGTGTTTTTGTTATTCAGAAGATTGGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAATCGAAGTCCACTCTGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAATCGAAGTCCACTCTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.185 | 0.176 | search_plus_done; http://172.18.8.135:50800/match?q=TGAAATCGAAGTCCACTCTGAA&k=0&no_gap=0&offset=0&limit=50
0.338 | 0.153 | search_minus_done; http://172.18.8.135:50800/match?q=TTCAGAGTGGACTTCGATTTCA&k=0&no_gap=0&offset=0&limit=47
0.343 | 0.006 | cgi_end;

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