GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:57:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2540037-2540056
TGCTTAGAGTTTTCGACCCAAGGTAGAAGA2540037TGAAATGATACCGCCTACGACGTCGTTTCTGCAGTTTTCAATAAATCTTT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2614752-2614771
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2614752TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2694466-2694485
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2694466TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2685097-2685116
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2685097TGAAATGATACCGCCTACGACGTCGTTTCTGCAATCGTCAATAAATCTTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2601312-2601331
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2601312TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2614423-2614442
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2614423TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2709030-2709049
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2709030TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2697309-2697328
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2697309TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2774283-2774302
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2774283TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2814235-2814254
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2814235TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2758539-2758558
TGCAGAGAGTTTTCGACCCAAGGTAGAAGA2758539TGAAATGATACCGCCTACGACGTCGTTTCTGCAATTTTCAATAAATCTTT
Andrena camellia isolate ACW chromosome 3.
CP118760.1:17010443-17010462
AGACAGGATATAACTATGGAATTAGGGAAG17010443TGAAATGATACCGCCTACGATCAGACGTGTTGGCCAGATAAACGCCTGAT
TSA: Pyrus x bretschneideri Unigene43337_XinShao mRNA sequence.
JR634680.1:21-40
CGAAAATTGCAAAAACGACG21TCGTAGGCGGTATCATTTCATCTTCTACCTTGGGTCTAAAACTCTCTGCA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38515413-38515432
AAAGATTTATTGACGATTGCAGAAACGACG38515413TCGTAGGCGGTATCATTTCATCTTCTACCTTGGGTCGAAAACTCTCTGCA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38377720-38377739
AAAGACTTATTGAAAATTGCAGAAACGACG38377720TCGTAGGCGGTATCATTTCATCTTCCACCTTTGGGTCGTAAACTCTCTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAATGATACCGCCTACGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAATGATACCGCCTACGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAATGATACCGCCTACGA&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTAGGCGGTATCATTTCA&k=0&no_gap=0&offset=0&limit=38
0.165 | 0.002 | cgi_end;

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